Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121262g00003 ATGGCTTCAAGACCCATCGTTCCTCAACAAGCAAGAGGGGATGCAATCGTGGGAGGAGGGAAGCAGCAACAGCAGCAGAAGAAGAACGGTGCCGGAAACCGAAAGGCCCTCGGAGAGATCGGAAATTTGGTCACTGTTAGAGGTGTAGAGGTCAAGCCTAATCGCCCCATTACAAGGAGTTTCTGTGCACAACTTCTTGCCAATGCGCAAGCAGCAGCAGCAGCTGAAAACAACAAGAAACAGGTATGTGCTAATGTGGGTGGACCTGCTCCTGAAGGAGTCGCAGTTGCTGCAAAAAGGGGTGCACCAAAGCCTGCTCACAGGAATGTAACTGCAAAACCAAAACCTGAAGCCGTGGAAGTCATTGACATAAGCCCTGAGAAGGAGATACCAAAGGACAAGCCTGTGAACAAGAATAAAAAGGAAGCAGCAGATGCCAACTCCAAGAAGAAATCACACACACTTACTTCAGTCCTCACAGCCAGAAGCAAGGCAGCATGTGGTATAACTAAGAAACCAAAGGAGCAGATTATTGACATCGATGCAGCTGATTTAGAGAATCATCTTGCTGCTGTTGAATACATTGAAGACATCTACAAGTTCTATAAGGAAGTTGAGAATGAGAGCCGTCCACATGATTACATAGACTCACAGCCAGAGATCAATGTAAAGATGAGAGCCATATTGGTTGATTGGCTCACAGATGTGCACACCAAGTTTGAACTCTCTACTGAGACACTTTATCTTACCATCAACATCATTGATAGGTTCTTAGCAGTGAAGACTGTGCCAAGGAGGGAACTCCAATTGGTTGGGATCAGTGCCATGCTCATGGCATCCAAGTATGAAGAAATCTGGCCCCCGGAGGTGAATGACTTTGTGTGCCTCTCAGATAGAGCTTACACTCATGAACAGATTCTTGTCATGGAGAAACTCATATTGGGGAAGCTGGAATGGACTTTGACTGTGCCTACACCATTTGTTTTCCTTGTTCGTTTCATCAAGGCTTCAGTTCCAGATCAGGAGCTGGAGAACATGGCACACTTTCTATCTGAGTTGGGAATGATGCATTATGAAACCTTAATGTACTGTCCATCAATTTTTGCGGCCTCAGCAGTATTTGCAGCAAGATGCACACTTAACAAGACACCCCTTTGGAATGACACACTTAAGCTACACACCGGTTACACACAAGAACAACTTATGGATTGTGCTAGGCTGCTAGTGAGTTTTCACTTGAATGCTGGGAATGGGAAGTTGAAGGTTGTGTACAGAAAATACTCAGATCCACAGAAAGGTGCAGTTGCTGTGCTCCCACCTGCTAAATATCTTCTCCCTGAAGCTTCTTCTGCCTCTTCTGGCTCAACATATTGA 1374 0.4556 MASRPIVPQQARGDAIVGGGKQQQQQKKNGAGNRKALGEIGNLVTVRGVEVKPNRPITRSFCAQLLANAQAAAAAENNKKQVCANVGGPAPEGVAVAAKRGAPKPAHRNVTAKPKPEAVEVIDISPEKEIPKDKPVNKNKKEAADANSKKKSHTLTSVLTARSKAACGITKKPKEQIIDIDAADLENHLAAVEYIEDIYKFYKEVENESRPHDYIDSQPEINVKMRAILVDWLTDVHTKFELSTETLYLTINIIDRFLAVKTVPRRELQLVGISAMLMASKYEEIWPPEVNDFVCLSDRAYTHEQILVMEKLILGKLEWTLTVPTPFVFLVRFIKASVPDQELENMAHFLSELGMMHYETLMYCPSIFAASAVFAARCTLNKTPLWNDTLKLHTGYTQEQLMDCARLLVSFHLNAGNGKLKVVYRKYSDPQKGAVAVLPPAKYLLPEASSASSGSTY 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121262g00003 457 Gene3D - 197 436 - -
Stsc121262g00003 457 Gene3D - 211 322 - -
Stsc121262g00003 457 FunFam G2/mitotic-specific cyclin 210 318 - -
Stsc121262g00003 457 FunFam G2/mitotic-specific cyclin-1 319 436 - -
Stsc121262g00003 457 MobiDBLite consensus disorder prediction 1 34 - -
Stsc121262g00003 457 SMART cyclin_7 231 315 IPR013763 -
Stsc121262g00003 457 SMART cyclin_7 328 410 IPR013763 -
Stsc121262g00003 457 Pfam Cyclin, C-terminal domain 324 440 IPR004367 -
Stsc121262g00003 457 CDD CYCLIN_AtCycB-like_rpt1 174 319 - -
Stsc121262g00003 457 PIRSF Cyclin_A_B_D_E 1 453 IPR046965 GO:0016538|GO:0044772
Stsc121262g00003 457 MobiDBLite consensus disorder prediction 126 151 - -
Stsc121262g00003 457 SUPERFAMILY Cyclin-like 186 321 IPR036915 -
Stsc121262g00003 457 CDD CYCLIN_AtCycB-like_rpt2 324 440 - -
Stsc121262g00003 457 SMART Cyclin_C_2 324 441 IPR004367 -
Stsc121262g00003 457 MobiDBLite consensus disorder prediction 126 149 - -
Stsc121262g00003 457 PANTHER CYCLINS 147 432 IPR039361 -
Stsc121262g00003 457 Pfam Cyclin, N-terminal domain 197 321 IPR006671 -
Stsc121262g00003 457 ProSitePatterns Cyclins signature. 226 257 IPR006671 -
Stsc121262g00003 457 SUPERFAMILY Cyclin-like 323 443 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121262g00003 Stsc-Chr121262 10765 13386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121262g00003 1 402 Core Cell Cycle Gene Families AT3G11520 57.143 1.60e-149 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121262g00003 K21777 - gmx:547919 662.914