Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121255g00006 ATGTTCTTCCTCCGAGTTCACTCGGTCGACTCGGAGCAGCCGCTGGACCCTGAATCCATCTTCTCCGAGATCGACGACGATTTGAGCCCTAAATTCAGGGAGCGGAGAGGGGTTCTCCACTTGTTCCGAAGCTCCTCTCACTCCTCCATCCCAAGCCCTAGCTCTCGCTCTTCTCTCGTCTTCATTCTCGCCGTTCCTAATTACCTTTCCTTCGATGATCTCATCCGCTGGTGCGGGACCCACCTCCACCATCTCCACCGCCTCCTCTTCATCAGGAATGATGGGATGGAAGATCGCTACAGTGTGCTGATTGAACTTCAGGATCAGCGTGCAGCTGATTCGTTTTATACCAATTTCAATGGCAAGACATTTTCTCCTGGAGAGGCAGAGGTATGCCATATCCTGTTTTTGGTTTCTGTGGAATACTCAGAATGTGCAGATATTGCTGGGACTCCTCCTGATGGATGTACTGAGATACCAACTTGCCCAGTTTGCCTCGAGAGATTGGACCCGGATAGAAGTGGAATACTCACTACACTTTGCGATCACTCCTTTCAATGCCCTTGTGTTTCGAAGTGGACATACTTATCTTGCCAGGTCTGTCGATTCTGTCAACAGCAAGATGAGAAGCCAACTTGTTTTGTTTGTGGAACGTTAGACGATTCCTGGGTTTGTATGATTTGCGGATTTGTTGGATGTGGAAGATATAAGGAAGGACATGCTATCCGGCATTGGAAAGACACCCAGCACTGTTATTCTCTTGATTTCAAAACACAGCAAATATGGGATTATGTAGGCGACAGTTATGTCCATCGGCTGAACCAGAACCAATCCAGACTTGATGGCAAGTTCGAGGGAATGAATTACCGGTGTAGTCTACTGTCTGGAGACTGTGATGAGTGCGAATGTCATGATGATTTAGAAATTGATGGAGCCCTATACAACAGCAAAGTCGAGGCGATTTTGGATGAATACAACCGTCTTCTAACATCTCAGCTGGAAACTCAAAGACAATATTATGAATCTTTGCTAGCTGAGGCAAAAAGCAAAGTGGACAGTTCCGTCTCTGAAGCAGTGGAGAAAGCAGTTACTTCTGGAATTCAGGACATCCAAGATAAACTGGGAAAGTGTACAGTAGAGAAAAATAGTGTTGCTGAGGTCAATAAGAAACTCATACAAAATCAACAGCTCTGGCGAAACAAAGTTAAAGCAGCTGAAGAGAGGGAAGCTGCATTAGCAAAATCCATGAGCCAAAAGATTGCTGATATGGAGGAACAGATTAGAGATGTCAAGATATTTGTACAAGCACAAAAAACAATTGATAAGATGACGGATTCAAACGGAATCAAGGACGGAACAGTGTTACCGGTTGCTTATGAGCAATCTACTCCCAGCAACAGTAAGAGAAACAGAAAGTCTGGTCGAAGGCGAAACTAG 1437 0.453 MFFLRVHSVDSEQPLDPESIFSEIDDDLSPKFRERRGVLHLFRSSSHSSIPSPSSRSSLVFILAVPNYLSFDDLIRWCGTHLHHLHRLLFIRNDGMEDRYSVLIELQDQRAADSFYTNFNGKTFSPGEAEVCHILFLVSVEYSECADIAGTPPDGCTEIPTCPVCLERLDPDRSGILTTLCDHSFQCPCVSKWTYLSCQVCRFCQQQDEKPTCFVCGTLDDSWVCMICGFVGCGRYKEGHAIRHWKDTQHCYSLDFKTQQIWDYVGDSYVHRLNQNQSRLDGKFEGMNYRCSLLSGDCDECECHDDLEIDGALYNSKVEAILDEYNRLLTSQLETQRQYYESLLAEAKSKVDSSVSEAVEKAVTSGIQDIQDKLGKCTVEKNSVAEVNKKLIQNQQLWRNKVKAAEEREAALAKSMSQKIADMEEQIRDVKIFVQAQKTIDKMTDSNGIKDGTVLPVAYEQSTPSNSKRNRKSGRRRN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121255g00006 478 MobiDBLite consensus disorder prediction 444 478 - -
Stsc121255g00006 478 Pfam Zn-finger in ubiquitin-hydrolases and other protein 198 273 IPR001607 GO:0008270
Stsc121255g00006 478 ProSiteProfiles Zinc finger UBP-type profile. 196 291 IPR001607 GO:0008270
Stsc121255g00006 478 CDD RING-H2_BRAP2 160 203 IPR047243 -
Stsc121255g00006 478 FunFam Zinc finger (Ubiquitin-hydrolase) domain-containing protein 184 292 - -
Stsc121255g00006 478 SMART Zf_UBP_1 212 261 IPR001607 GO:0008270
Stsc121255g00006 478 SUPERFAMILY RING/U-box 178 277 - -
Stsc121255g00006 478 PANTHER BRCA1-ASSOCIATED PROTEIN 29 477 - -
Stsc121255g00006 478 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 290 IPR013083 -
Stsc121255g00006 478 ProSiteProfiles Zinc finger RING-type profile. 162 202 IPR001841 -
Stsc121255g00006 478 Coils Coil 388 408 - -
Stsc121255g00006 478 Pfam BRCA1-associated protein 2 53 148 IPR011422 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121255g00006 Stsc-Chr121255 16235 20031 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121255g00006 146 242 C3H Transcription Factor Family AT2G39100 28.866 9.09e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121255g00006 K10632 - gmx:100807397 715.687