Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121253g00006 ATGCAGAAGACAAATATTATGAATTCTGATGGAGCCATGCCACAAAAGCATGAGGAGAATACTTTCCTTGATACCAAAACAATGGCAGCAGGTTCAGACCCATCACTATCACCAACAAGCATGGTTGCTGCTGCAGATGTAGGAAACATCGAAAACGGCAATGAAGAGAATCTCAATCTCTCTTTGGATGAATTCTATCATCAAGACCACAATCCACAACAACAAACAACAGAAGGTGTCTCCACCTTTGAGAATGGAACATCTTCCATATCTATGGACATAGGGAACACACACAATCTGAGTTTGAACATTGGCAATTCCTACAACAATGGTACTACTACCCCTTTGGTGCAAGAGGCTGTGATTGATCATGATGATGCATTTCACTTTGAGAAATCCAATTGGGACTCTACCATTCATGAATTGCTTGATCTTGGATTTCCTAACCACAATGAAAATCAGCAAGAACATGATCACCAACAATTTCAGCTATTTGAGGCACAAAATTGTAGTCAAAGTTACAATTCATCAGATCTTCTGCAGCTTCATTTGAATCCAAATCAAATCCCTTGCATCACAAACCCAATTCAGAATAATACACCAAACTTTCAGCATTCCATGGGGTTTCTTGGTGACCTTCCTGTGGGAACAGACTATGACACTTCACTTCATTTGAATCCAACCTTTGGAGTTGGAGAGCTGTTTCCCTCTCTCCCCCACGGCTACACTAGGCCTACTGATTCGAGGAGCGGATTCCTCTTTGGAGGACGGGATGAGATGGAGGGAAATGGAGCTTGTTATCAAGATGGAGATGGGAACCAGATTGACATTGGAGTGATGGAGTTCAACAGAGGCAGAGCTTGTTCTGTTGGTGGCAGAGGGAGGAGAGGACAAGGTACCATGCCAATTGACAAACAAAGAAGAGAGCAATTGAATGACAAATACCAAATTTTGAGAAGTTTGATCCCAAGCCCCACTAAGGTAGATAGAGCATCTGTGGTGGGAGATGCAATTGATTACATAAGAGAACTGATTAGAACAGTCAATGAACTCAAGTCATTGGTGGAGAAGAAAAGGATTGGGAGGGAGAGGTTCAAGAGGCACAAAGATGAAAATGATGCTTCAGAGAGCATTAGACCTTATGGTGATGGGTCTATAAGAACCTCATGGCTTCAGAGGAAGTCGAAAGACAGCGAGGTTGATGTCCGGATAATCGATGATGAAGTTATAATCAAGATGGTTCAGAGGAAGAAGATCAACTGCATGCTTTTTGTCCCCAAGGTCTTGGATGAACTTCAGTTGGATCTTCAGCATGTTGCTGGTGGCCATGTTGGAGAATATTGCAGTTTCTTGTTCAATAGCAAGATAATTGAAGGTTCTTCAGTGTATGCAAGTGCCATTGCCAACAGGGTGATTGAGGTTATGGACACTCAGTATGCAGCAGCAGCTGTTCCACACAATAGCGGCTATTAG 1473 0.4263 MQKTNIMNSDGAMPQKHEENTFLDTKTMAAGSDPSLSPTSMVAAADVGNIENGNEENLNLSLDEFYHQDHNPQQQTTEGVSTFENGTSSISMDIGNTHNLSLNIGNSYNNGTTTPLVQEAVIDHDDAFHFEKSNWDSTIHELLDLGFPNHNENQQEHDHQQFQLFEAQNCSQSYNSSDLLQLHLNPNQIPCITNPIQNNTPNFQHSMGFLGDLPVGTDYDTSLHLNPTFGVGELFPSLPHGYTRPTDSRSGFLFGGRDEMEGNGACYQDGDGNQIDIGVMEFNRGRACSVGGRGRRGQGTMPIDKQRREQLNDKYQILRSLIPSPTKVDRASVVGDAIDYIRELIRTVNELKSLVEKKRIGRERFKRHKDENDASESIRPYGDGSIRTSWLQRKSKDSEVDVRIIDDEVIIKMVQRKKINCMLFVPKVLDELQLDLQHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIEVMDTQYAAAAVPHNSGY 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121253g00006 490 CDD bHLH_AtMYC1_like 302 364 IPR045896 -
Stsc121253g00006 490 Gene3D - 301 369 IPR036638 GO:0046983
Stsc121253g00006 490 SMART finulus 301 350 IPR011598 GO:0046983
Stsc121253g00006 490 PANTHER TRANSCRIPTION FACTOR BHLH91 35 483 IPR045895 GO:0006355|GO:0048658
Stsc121253g00006 490 Pfam Helix-loop-helix DNA-binding domain 303 344 IPR011598 GO:0046983
Stsc121253g00006 490 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 295 344 IPR011598 GO:0046983
Stsc121253g00006 490 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 298 357 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121253g00006 Stsc-Chr121253 22335 24735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121253g00006 279 490 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 52.564 4.05e-72 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc121253g00006 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121253g00006 - - gmx:100782512 468.774