Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121253g00005 ATGGCTTCTTCCCTTCTTCACCAGACAACACAGTGCTTCTTCTTCAACAACCAGTTAAAAGGACTGAGCCATGGATTCTTGTGGCGACCCCCTTGTTCTTCATTTGGCTCCTCTCATGCTGAAAACAGAGCTCGACCCATCAGAGCTTCGGTTGATACACCCCCATTCCCATTGTTTCAGCCTCCAAAACAGCAAGAATCAGCCTCTGAGTTGGAGCCTGCGGATCCTGATTTCTACAAGATCGGTTATGTCCGAAGCATGAGAGCTTACGGAGTTGAGTTTAAGGAAGGGCCGGATGGATTTGGTGTGTACGCCTCCAAAGATGTGGAACCTCTTCGGCGAGCAAGGGTTATAATGGAAATTCCCCTAGAATTGATGTTAACCATAAGCAAGAAACTCCCATGGATGTTTTTCCCAGATATAATTCCTATAGGTCATCCAATATTTGATATTATCAACTCGACAAATCCGGAGACAGATTGGGACTTAAGGTTAGCTTGCCTCCTCCTATATGCATTTGATGTCGAAGACAACTTTTGGCAGTTGTATGGCGACTTCTTACCAAGTGCAGATGAGTGCACCAGCTTACTTCTAGCTTCGGAGGATGAACTTTCAGAGCTGCAAGATCCTGATCTTGCTTCTACTATGAGAAACCAGCAACAGCGAGCACTAGAGTTCTGGGAAAAGAACTGGCACAATTCTGCACCCCTTAAAATAAAGCGTCTTGCTCGGGATCCTCGAAGGTTCATGTGGGCAGTGGGTATTGCACAGTCACGATGTATTAACATGCAAACGAGAATCGGTGCATTAACTCAAGATGCGAATATGCTAATTCCTTATGCCGACATGCTGAACCATTCCTTTGAACCGAATTGTTCTTTGCATTGGCGTTTTAAGGATAGGATGCTTGAAGTTCTTATAAATGCTGGAGAGCAAATTAAAAGAGGAGACGAGATGACAATTAATTACATGAGCGGACAGAAGAATGAGATGCTAATGCAAAGATATGGATTTTCATCACCCGTGAATCCTTGGGATGTGATCAAATTCTCAGGCAATGCACAGATTCATCTGGATTCCTTTTTGTCCGTCTTCAATATATCCGGCCTTCCCGAAGAGTATTACCATAACAATTTTCTAGCTAACGATGGCGACACTTTCGTCGATGGAGCTGTTGTAGCCGCAGCACGAACATTGCCAACTTGGTCGGACAAGGATGTGCCTCCAATCCCCAGTGCAGAAAGAATGGCAGTAAAGGAGTTACAAGAAGAATGTCGACAGATGCTTGGCCAATACGCTACAACCTCTAAGCAAGACGAGAAATTGCTAGATTCGATGCCGAACGCTCCAAGGACACTTGAAGCTGCAATCAAGTATAGGTTGCACCGGAAATTGTTCATTGAGAAGGTTATCCGAGCATTGGAGATCTACCAAGATAAAATACTATTCTGA 1452 0.4442 MASSLLHQTTQCFFFNNQLKGLSHGFLWRPPCSSFGSSHAENRARPIRASVDTPPFPLFQPPKQQESASELEPADPDFYKIGYVRSMRAYGVEFKEGPDGFGVYASKDVEPLRRARVIMEIPLELMLTISKKLPWMFFPDIIPIGHPIFDIINSTNPETDWDLRLACLLLYAFDVEDNFWQLYGDFLPSADECTSLLLASEDELSELQDPDLASTMRNQQQRALEFWEKNWHNSAPLKIKRLARDPRRFMWAVGIAQSRCINMQTRIGALTQDANMLIPYADMLNHSFEPNCSLHWRFKDRMLEVLINAGEQIKRGDEMTINYMSGQKNEMLMQRYGFSSPVNPWDVIKFSGNAQIHLDSFLSVFNISGLPEEYYHNNFLANDGDTFVDGAVVAAARTLPTWSDKDVPPIPSAERMAVKELQEECRQMLGQYATTSKQDEKLLDSMPNAPRTLEAAIKYRLHRKLFIEKVIRALEIYQDKILF 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121253g00005 483 Pfam SET domain 100 323 IPR001214 GO:0005515
Stsc121253g00005 483 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 68 453 - -
Stsc121253g00005 483 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 335 475 IPR036464 -
Stsc121253g00005 483 CDD SET_LSMT 91 338 - -
Stsc121253g00005 483 FunFam Plastid transcriptionally active 14 360 480 - -
Stsc121253g00005 483 SUPERFAMILY SET domain 99 339 IPR046341 -
Stsc121253g00005 483 Gene3D - 358 481 IPR036464 -
Stsc121253g00005 483 Gene3D set domain protein methyltransferase, domain 1 84 338 - -
Stsc121253g00005 483 FunFam Protein PLASTID TRANSCRIPTIONALLY ACTIVE 14 84 338 - -
Stsc121253g00005 483 Coils Coil 418 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121253g00005 Stsc-Chr121253 17213 21476 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc121253g00005 SET 3.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121253g00005 - - gmx:100790985 798.89