Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121252g00005 ATGAAGCTCTCCTTCTCGATCCCCTCGAAGCCCTCTTCCTCCTCCAAACCCGTCAAATTTGACGACTCTTCCAAAAACGACGCCGCACCCTCGAAGCACTTTGTCACCGAATTCGACCCTTCCAAACCGCCAACCGAACAAACCGCCACCGTTATTCCCCCGATCCAAAACGAATGGCGACCCACCAAGAAGATGAAGAACCTCGAGCTCCCCATCACCGACCCCAACGCTGACCATCAATCCCTCGAATTCGAGCACGATTCCAATGCCGCCGACGCGGAACACGGCTCCGACATGTCCTACGGGCTCAACCTGCGCCAAGCCGCCAAGAAAAACGGCGAAACCGGTGGAATCGGTGGTGATGATGAGGATGATAGGGTACCGCGGCAACGACCGGAGGTGGCATTGCTGCAGAAGTTTAAGGACGACTTGAAGCGGCTGCCTGATCACGGGGGGCTTGAGGAGTTTGATGATGTCCCTGTTGAGGGTTTCGGCAAGGCCTTGCTGGCCGGATATGGGTGGTCAGAAGGAATGGGTATAGGGAGGAATGCCAAGGAGGACGTTAAGGTTGTGGAGTACAAGAAGAGGACTGCCAAGGAAGGGTTAGGGTTTGTTGGTGACGATCGTGGTTCTGGTCGGAGCCAGAAGAAGGAGGAGAAGAAGAAAAACAGGGAAGATAGTGGGAGAAATGATGCAGGTTTTGTTAGTGAGAAGAAGATTGTGAGGATTGTTGGGGGAAGAGATGCTGGATTGAAGGGTATTGTTGTGAGGAGAATTGGTGAGGATTGTATTGTTTTGAAGGTTTCAAGGAGTGGTGAGGAAGTGGAAGTTAGAGTGAGTGTGGATGATGTTGCTGAACTGGGATCTGCTGCGGAAGAGAGTTGCTTGCGGAAATTGAAGGAGCTGAGGATTCGGCAAAAGGGTGAGGGTGATGGTAACAGGGAGAAAGGTAGGGTTGACAAGGGTTCAAGGCATAAGCGTGAGAGAGAGCGAGGCGAAGTTGTGAAGACAACTCGAGCGGAAGCTAATGGGGGTGATCGTAGGAAGGAAGATCAGCAGCAGGGGAGGAAACAAGTTTCTTGGCTTGCAAGTCACATCCGAGTTAGGGTCATCAGCCAAGACATCAAAGGAGGGAGGTTGTATTTGAAAAAGGCACATGTTTTGGATGTTGTTGGGCCTTCGACTTGTGATATATCTATGGATGAGAGCAAGGAGATTGTTCAAGGAGTGTCCCAAGATATGCTGGAAACGGCGCTTCCTCGACGTGGGGGACCAGTTCTTGTGCTATCTGGTAAATATAAGGGCGCCTTTGGGAGCCTCATTGAGAGGGATTTGGATCGTGAAGTTGGTATTGTTCGGGATGCTGATACACATGAGCTGCTCAATGTGAAGCTTGAACAGATTGCAGAGTATATAGGGGACCCTAGCTTATTAGGGCATTGA 1443 0.5107 MKLSFSIPSKPSSSSKPVKFDDSSKNDAAPSKHFVTEFDPSKPPTEQTATVIPPIQNEWRPTKKMKNLELPITDPNADHQSLEFEHDSNAADAEHGSDMSYGLNLRQAAKKNGETGGIGGDDEDDRVPRQRPEVALLQKFKDDLKRLPDHGGLEEFDDVPVEGFGKALLAGYGWSEGMGIGRNAKEDVKVVEYKKRTAKEGLGFVGDDRGSGRSQKKEEKKKNREDSGRNDAGFVSEKKIVRIVGGRDAGLKGIVVRRIGEDCIVLKVSRSGEEVEVRVSVDDVAELGSAAEESCLRKLKELRIRQKGEGDGNREKGRVDKGSRHKRERERGEVVKTTRAEANGGDRRKEDQQQGRKQVSWLASHIRVRVISQDIKGGRLYLKKAHVLDVVGPSTCDISMDESKEIVQGVSQDMLETALPRRGGPVLVLSGKYKGAFGSLIERDLDREVGIVRDADTHELLNVKLEQIAEYIGDPSLLGH 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121252g00005 480 Pfam G-patch domain 148 205 IPR026822 -
Stsc121252g00005 480 SMART kow_9 234 261 IPR005824 -
Stsc121252g00005 480 SMART kow_9 419 446 IPR005824 -
Stsc121252g00005 480 MobiDBLite consensus disorder prediction 210 231 - -
Stsc121252g00005 480 PANTHER G PATCH AND KOW-CONTAINING 1 476 IPR045166 GO:0000398
Stsc121252g00005 480 MobiDBLite consensus disorder prediction 116 131 - -
Stsc121252g00005 480 MobiDBLite consensus disorder prediction 41 55 - -
Stsc121252g00005 480 MobiDBLite consensus disorder prediction 307 355 - -
Stsc121252g00005 480 SMART G-patch_5 159 205 IPR000467 GO:0003676
Stsc121252g00005 480 MobiDBLite consensus disorder prediction 1 19 - -
Stsc121252g00005 480 Gene3D - 365 419 - -
Stsc121252g00005 480 ProSiteProfiles G-patch domain profile. 161 207 IPR000467 GO:0003676
Stsc121252g00005 480 MobiDBLite consensus disorder prediction 79 93 - -
Stsc121252g00005 480 MobiDBLite consensus disorder prediction 307 356 - -
Stsc121252g00005 480 MobiDBLite consensus disorder prediction 204 231 - -
Stsc121252g00005 480 MobiDBLite consensus disorder prediction 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121252g00005 Stsc-Chr121252 28534 29976 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121252g00005 312 447 C2H2 Transcription Factor Family AT1G55460 29.710 4.46e-06 47.0