Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121252g00002 ATGGATCCTCACCAAGGTCATAACCAGAACCAGAACCCGAACCCATCCATGGGAGTTGGTGGTAGTGGAGCACAATTTCCCTACAGTTCCAATCCATACCAGCCCAACCAAATGACCGGCTCACCCGGGATGGTTGTTCCGCCAATTGGGAACATTCAATCAACTGGTCAGCCTGCTGGAGCTCAGCTGGGCCAACATCAACTTGCTTATCAACATATCCATCAGCAACAGCAGCAGCAGCAACAGATGCAACTTCAGCAACAGCTTCAGTCCTTTTGGGCTAACCAGTACCAAGAAATTGAGAAGGTAACTGATTTCAAGAACCACAGCCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTAAGGATGATATCCGCCGAGGCGCCGGTTATATTTGCAAGGGCATGCGAAATGTTCATCCTAGAGTTGACCTTGCGATCCTGGAACCACACTGAAGAGAACAAGAGGAGGACCCTTCAAAAGAATGACATTGCTGCTGCAATTACAAGAACCGATATCTTCGATTTCTTGGTTGACATTGTTCCCCGGGAGGATCTGAAAGACGAAGTGCTTGCCTCAGTGCCAGGAGGAACAATGGCTGTTCCAGGGCCTGCAGATTCCATTCCCTACTGCTATATGCCGCCACAGCATGCACAAGTCGGAGCTGCCGGAGTGATGATGGCTAATCCTGCAATGGACCCGAATTTATATGCTCAACAACCTCATCCTTACATGGCTCCGCAGATGTGGCCACAGCCGCCGGAGCAACAACAGTCGCCTTCAGACCAGTAG 807 0.5006 MDPHQGHNQNQNPNPSMGVGGSGAQFPYSSNPYQPNQMTGSPGMVVPPIGNIQSTGQPAGAQLGQHQLAYQHIHQQQQQQQQMQLQQQLQSFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLASVPGGTMAVPGPADSIPYCYMPPQHAQVGAAGVMMANPAMDPNLYAQQPHPYMAPQMWPQPPEQQQSPSDQ 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121252g00002 268 SUPERFAMILY Histone-fold 78 182 IPR009072 GO:0046982
Stsc121252g00002 268 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 77 217 - -
Stsc121252g00002 268 MobiDBLite consensus disorder prediction 247 268 - -
Stsc121252g00002 268 MobiDBLite consensus disorder prediction 1 44 - -
Stsc121252g00002 268 MobiDBLite consensus disorder prediction 1 41 - -
Stsc121252g00002 268 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 110 173 IPR003958 -
Stsc121252g00002 268 FunFam Nuclear transcription factor Y subunit gamma 73 188 - -
Stsc121252g00002 268 Gene3D Histone, subunit A 70 188 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121252g00002 Stsc-Chr121252 18238 20433 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121252g00002 21 267 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.729 5.94e-87 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Stsc121252g00002 CBFD_NFYB_HMF 6.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121252g00002 K08066 - gmx:100527803 372.474