Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121248g00006 ATGGCTCCCGAATATGCTATGGAAGGGTTATACTCAGTAAAATCTGATGTTTTTAGTTTTGGGATTCTTCTACTTGAAATCATTTGTGGCAAAAGAAATAGCGGATTTTACCTTTCGGAGCATGGTCAAAGTCTTCTTATATATAGTTGGAAACTATGGTGTGAAGGAGAATGTTTGAAGCTGGTAGATCCTATATTAGAAAATACATACACAACAAATGAAGTTACAAGGTGTATTCATATTGGTTTGTTGTGTGTACAAGAAGATGCAGAGGATCGACCAACAATGTCCACGGTTGTTGTTATGCTTGCAAGTGAGACAATGACTCTTCCTAATCCTAATCATCCTGCATTTTCAGTTGGAAGAAAGATCAATAAAGAAGAAGAGTCAACGTCAAAGGCTTCTAACAAGGATCCTTCAATCAATGAAATATCAGTTTCAAATATTTTACCTAGGTAA 459 0.3573 MAPEYAMEGLYSVKSDVFSFGILLLEIICGKRNSGFYLSEHGQSLLIYSWKLWCEGECLKLVDPILENTYTTNEVTRCIHIGLLCVQEDAEDRPTMSTVVVMLASETMTLPNPNHPAFSVGRKINKEEESTSKASNKDPSINEISVSNILPR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121248g00006 152 MobiDBLite consensus disorder prediction 125 152 - -
Stsc121248g00006 152 MobiDBLite consensus disorder prediction 135 152 - -
Stsc121248g00006 152 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 147 - -
Stsc121248g00006 152 ProSiteProfiles Protein kinase domain profile. 1 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121248g00006 152 SUPERFAMILY Protein kinase-like (PK-like) 1 118 IPR011009 -
Stsc121248g00006 152 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 1 108 - -
Stsc121248g00006 152 Gene3D Transferase(Phosphotransferase) domain 1 1 115 - -
Stsc121248g00006 152 Pfam Protein tyrosine and serine/threonine kinase 1 102 IPR001245 GO:0004672|GO:0006468
Stsc121248g00006 152 Pfam Domain of unknown function (DUF3403) 105 152 IPR021820 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121248g00006 Stsc-Chr121248 39588 40159 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121248g00006 1 152 Receptor kinase-like Gene Family AT4G23140 47.771 1.19e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121248g00006 PK_Tyr_Ser-Thr 3.3e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121248g00006 - - ahf:112718031 265.388