Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121248g00005 ATGGCGTTTGCAATCGTGGCTGACACTGATGGCACCGAGGACGATGAGCTTCCCGGAATCCCGACAACACCGCACGAAGAAGATGGCGGAAGTTTACAAGATGGGACAGTAGTTGCCATAAAAAGACTATCGCAAACATCTGATCAAGGTTTAGACGAGTTCAAGAATGAAGTAATCTTCATAGCCAAATTACAACATAGGAACCTTGTGAGATTGCTGGGTTGTTGTGTTGAGGAAAATGAAAAGCTACTTGTGTACGAGTATATGTCCAATTCCAGCCTTGCCCTTCATCTATTCGATGTAGAAAAACGAAAGCAACTGAGTTGGAAGGTTCGGATGCATATTATTAAAGGAATCGCACGCGGACTTTTATATCTTCATGAAGATTCTAGACTTAGAGTAATTCATAGAGATATGAAAGCTAGTAATGTTCTTCTCGACGACGATATGAATCCGAAAATATCAGATTTTGGATTGGCAAGAGCATTTAAAAAAGGTCAAAATCAAGAAAATACTGGAAGAATTATGGGCACCTAG 537 0.4041 MAFAIVADTDGTEDDELPGIPTTPHEEDGGSLQDGTVVAIKRLSQTSDQGLDEFKNEVIFIAKLQHRNLVRLLGCCVEENEKLLVYEYMSNSSLALHLFDVEKRKQLSWKVRMHIIKGIARGLLYLHEDSRLRVIHRDMKASNVLLDDDMNPKISDFGLARAFKKGQNQENTGRIMGT 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121248g00005 178 Gene3D Transferase(Phosphotransferase) domain 1 89 178 - -
Stsc121248g00005 178 ProSiteProfiles Protein kinase domain profile. 1 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121248g00005 178 MobiDBLite consensus disorder prediction 7 32 - -
Stsc121248g00005 178 FunFam Cysteine-rich receptor-like protein kinase 11 19 88 - -
Stsc121248g00005 178 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 89 178 - -
Stsc121248g00005 178 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Stsc121248g00005 178 SMART serkin_6 2 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121248g00005 178 Gene3D Phosphorylase Kinase; domain 1 18 88 - -
Stsc121248g00005 178 SUPERFAMILY Protein kinase-like (PK-like) 33 178 IPR011009 -
Stsc121248g00005 178 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 30 178 - -
Stsc121248g00005 178 Pfam Protein tyrosine and serine/threonine kinase 33 171 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121248g00005 Stsc-Chr121248 37772 39459 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121248g00005 30 178 Receptor kinase-like Gene Family AT4G23230 63.758 2.38e-62 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121248g00005 PK_Tyr_Ser-Thr 9.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121248g00005 - - ahf:112718031 268.085