Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121248g00001 ATGGCAACAAATGGTTCCAATGATGATCTCAAATATGACCAAAATCAAGTCTCAAACCTCCACAACAATTCCAATGTGATAGAATTTGTGAAGTTATCCAATGATGGTTTAATCCATGGGTCGAAAATGGAAGAACTTGATCTTTTCCACATAGAACACAAGACAACACCACCACCACGCCCAAATAATTTAGAAGTAAAGCCCTTCTCATGCAATTTTTGTAAGAAGGGGTTCACTTCTTCACAAGCATTAGGAGGGCATCAAAATGCACACAAACAAGAGCGCGCGATAGCGAAACGTCGCCAAGAGACTGATGCTGGCCATGGCGGTGGTATTTTTGGTTACCCTTATTCCTTTTCCTACTACCACCCTTTCCCTAGCTTTTCCACACACCCTTTGTCTCATAATAATAGGGCACTTGGGGTGAGGTTGGAATCCAAGATTCATAAGCCAAATGATTGGAATAGTGGAATCATGATGATGAGGCATGCCCATGAAATCAACAAGCAAGAAGAAGACCCCTCTAGCTCTATGCTTGATTTGTCACTTAAGCTTTAA 558 0.4158 MATNGSNDDLKYDQNQVSNLHNNSNVIEFVKLSNDGLIHGSKMEELDLFHIEHKTTPPPRPNNLEVKPFSCNFCKKGFTSSQALGGHQNAHKQERAIAKRRQETDAGHGGGIFGYPYSFSYYHPFPSFSTHPLSHNNRALGVRLESKIHKPNDWNSGIMMMRHAHEINKQEEDPSSSMLDLSLKL 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121248g00001 185 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Stsc121248g00001 185 Gene3D Classic Zinc Finger 46 108 - -
Stsc121248g00001 185 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 156 IPR044246 GO:0009788
Stsc121248g00001 185 SUPERFAMILY beta-beta-alpha zinc fingers 67 96 IPR036236 -
Stsc121248g00001 185 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121248g00001 Stsc-Chr121248 1143 1700 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121248g00001 65 155 C2H2 Transcription Factor Family AT5G25160 49.451 1.46e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc121248g00001 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121248g00001 - - ahf:112786570 210.305