Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121247g00005 ATGACGACGACAACAACAGCAATATCACTCTCCCTTCACTTCTTTCTCCCTCGGAACCCAAAACCCTTGCAAAACCCTAATTTCACCCTAAAAATCCAAAACCCCCCTTTCAAATTCAGACCCCAATTTTCTTGGGAAACAATCACCCCTCCTTCCTCCACCGACCGCGGCCTCATTTTTCAGGAAAAAGTTCAATACCTCAAGAATCTCAATGTGAACCCACAGAAAGCCTTCCAAGTAAACCCTAACCTACGATCCACACCACTCTCCACCCTCAAATCCGTCGAGCAATGCCTCTCTTCCATGGGAATCAACCGCTCCGCCATGGGAAGAATCCTCGACATGCTCCCGGAGCTTCTCAACCGCGACCCCGACATGGACCTCTACCCAATCCTCGATTTCCTCCTCAACGACGTCGGAAACCCTTACCCCGACGTTCGCAAATCGATCTTGCGGTGCCCTAGGCTCTTGATCTCAAGTGTGGAGGAGCAAATGAAGCCAACATTGAAATTCCTGATGAAATTAGGGTTCACCGGTTCGAATTCCCTCACATGTCAGAACACAGTGCTACTCGTTTCGAGCGTGGAGGGAACGCTCGCTCCCAAGATCGAGTTCTTGAAAAGCCTGGGGCTTTCAGAATTGGAGGTTAATTACATGATTGTGAGGTCCCCTGCTTTGTTAACATATAGTGTAGAGAAGAATTTGAAGCCAAAAGTTGAGTACTTTTTGAATGAGATGAATGGGAACATTTCAGAGTTGAAGAGGTTTCCACAGTATTTTTCATTTAGCTTGGAAGGGAGGATTAAGCCAAGGCATAAGGTGTTGGTTGAGAATGGGGTGAAACTACCTTTGTATCTTATGTTGAAGGGCGATGATGGTGGGTTCTATGAAACACTGATTAATACCCGGTTAAGAAAGCTTGATGGCAGGTAG 933 0.4673 MTTTTTAISLSLHFFLPRNPKPLQNPNFTLKIQNPPFKFRPQFSWETITPPSSTDRGLIFQEKVQYLKNLNVNPQKAFQVNPNLRSTPLSTLKSVEQCLSSMGINRSAMGRILDMLPELLNRDPDMDLYPILDFLLNDVGNPYPDVRKSILRCPRLLISSVEEQMKPTLKFLMKLGFTGSNSLTCQNTVLLVSSVEGTLAPKIEFLKSLGLSELEVNYMIVRSPALLTYSVEKNLKPKVEYFLNEMNGNISELKRFPQYFSFSLEGRIKPRHKVLVENGVKLPLYLMLKGDDGGFYETLINTRLRKLDGR 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121247g00005 310 Pfam mTERF 145 294 IPR003690 GO:0003690|GO:0006355
Stsc121247g00005 310 Pfam mTERF 60 174 IPR003690 GO:0003690|GO:0006355
Stsc121247g00005 310 SMART mt_12 217 249 IPR003690 GO:0003690|GO:0006355
Stsc121247g00005 310 SMART mt_12 250 281 IPR003690 GO:0003690|GO:0006355
Stsc121247g00005 310 SMART mt_12 147 178 IPR003690 GO:0003690|GO:0006355
Stsc121247g00005 310 SMART mt_12 110 142 IPR003690 GO:0003690|GO:0006355
Stsc121247g00005 310 SMART mt_12 181 212 IPR003690 GO:0003690|GO:0006355
Stsc121247g00005 310 SMART mt_12 75 105 IPR003690 GO:0003690|GO:0006355
Stsc121247g00005 310 Gene3D Transcription termination factor 3, mitochondrial 61 308 IPR038538 -
Stsc121247g00005 310 PANTHER CGI-12 PROTEIN-RELATED 210 301 IPR003690 GO:0003690|GO:0006355
Stsc121247g00005 310 SUPERFAMILY ARM repeat 84 192 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121247g00005 Stsc-Chr121247 29862 33137 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Stsc121247g00005 mTERF 4.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121247g00005 K15031 - csin:114282080 342.813