Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121247g00002 ATGGGTCCAATTGGTTTGGTCTTGGTCGTCATCAACCTCGCAATATTCTCCTCCTCGCCGGTGTTCAGCTACGGAGGAGGAGGATGGATTAATGCACATGCTACCTTCTATGGTGGAAGTGATGCTTCGGGAACAATGGGTGGGGCTTGTGGGTATGGGAACCTGTATAGTCAAGGGTATGGAACAAACACAGCAGCATTGAGCACAGCACTGTTCAACAATGGTTTGAGCTGTGGTTCATGCTATGAGATAAGGTGTGTGAATGACCACAGGTGGTGCCTACCTGGCTCAATAATGGTAACTGCAACCAATTTCTGCCCCCCAAACAATGCCTTACCCAACAATGCAGGAGGGTGGTGCAACCCTCCCTTACACCACTTTGATCTTGCTCAGCCTGTTTTCTTGCGCATTGCTCAATACAGAGCTGGAATTGTCCCTGTTTCTTACAGAAGGGTACCCTGCAGGAGAAGGGGAGGAATAAGGTTCACAATCAATGGCCACTCCTACTTCAACCTAGTGTTGGTGACAAACGTGGGCGGCGCCGGCGACATTCACGGCGTGGCCATCAAGGGTTCAAGAACTGGGTGGATGGCAATGTCAAGAAACTGGGGACAGAACTGGCAGAGCAACAACTACCTTAACGGCCAAAGCCTCTCCTTCAAAGTGACCACCAGTGATGGCCGTAGTGTGCTCTCTTACAATGTTGCCCCACCTGGATGGTCATTTGGCCAAACCTACACCGGTGCCCAATTCCGCTAA 759 0.5086 MGPIGLVLVVINLAIFSSSPVFSYGGGGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIRCVNDHRWCLPGSIMVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLVTNVGGAGDIHGVAIKGSRTGWMAMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRSVLSYNVAPPGWSFGQTYTGAQFR 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121247g00002 252 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Stsc121247g00002 252 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Stsc121247g00002 252 PRINTS Expansin signature 86 97 IPR002963 GO:0009664
Stsc121247g00002 252 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Stsc121247g00002 252 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Stsc121247g00002 252 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Stsc121247g00002 252 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Stsc121247g00002 252 PRINTS Expansin signature 234 250 IPR002963 GO:0009664
Stsc121247g00002 252 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Stsc121247g00002 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 248 IPR007117 -
Stsc121247g00002 252 FunFam Expansin 159 251 - -
Stsc121247g00002 252 FunFam Expansin 19 155 - -
Stsc121247g00002 252 Pfam Expansin C-terminal domain 160 237 IPR007117 -
Stsc121247g00002 252 Gene3D - 15 155 IPR036908 -
Stsc121247g00002 252 SUPERFAMILY PHL pollen allergen 156 248 IPR036749 -
Stsc121247g00002 252 Gene3D - 159 251 IPR036749 -
Stsc121247g00002 252 SMART dpbb_1 64 149 IPR007112 -
Stsc121247g00002 252 Pfam Lytic transglycolase 64 149 IPR009009 -
Stsc121247g00002 252 PANTHER EXPANSIN-A15 17 251 IPR002963 GO:0009664
Stsc121247g00002 252 SUPERFAMILY Barwin-like endoglucanases 28 177 IPR036908 -
Stsc121247g00002 252 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Stsc121247g00002 252 PRINTS Expansin/Lol pI family signature 234 248 IPR007118 GO:0005576
Stsc121247g00002 252 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Stsc121247g00002 252 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Stsc121247g00002 252 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Stsc121247g00002 252 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Stsc121247g00002 252 CDD DPBB_EXPA_N 28 154 - -
Stsc121247g00002 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 159 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121247g00002 Stsc-Chr121247 10699 13897 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121247g00002 1 252 Expansin Gene Family AT2G03090 78.968 8.76e-149 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121247g00002 - - gmx:100796316 477.248