LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121243g00012	ATGGCCAAGGCCAATTATTTCAAGCAGTTACTGCAACGTCTCTCCACAGGGTCAGACGAGGTGAAGATGATGATGGCCACAACTTTAGCAGAAATGGAGCTAACTGACCATAATAAGGAGTCCTTGTTTGAAAGTGGTATACTTGCTCCGCTTCTTGACTTGGTCTCACATAATGATGTTCAGGTGAAAATAGTGGCCCTTAAAGCTCTTCAGAATCTATCCAGTTTAAAGAAAAATGGACTGGAAATGATTCGACAAGGTGCAGCACGCCCGTTACTTAACATTCTTTTCCAACATAGCATTCCATCTTCGAGTTTGTGGGAACATGTAGCACCAATAATTATGCAGCTCGTTGCATCAACGACGTCACAAGATGCACAGACACTAGTTTCACTGCTAGAATATGATGAGGATGTTTTTAACCTTTTCTTTCTAATTAATTATAAGATGCCTGATGTGCGGCAATACACTATACAGACATTTTATGCCCTGTGCCAATCGCCCTCAGCTTCTTATATTAGGACCAAGCTAAGAGAGTGCACAGCTATCCAAGTACTGGTTAAGTTGTTTGAGACTGAAAACCAAAAACTACGAGGAAGTGCAGTAAAGCTTTTTTCTTGCCTTGTAGAAGGTTGTGATGAAGCCATCATACTATAG	657	0.411	MAKANYFKQLLQRLSTGSDEVKMMMATTLAEMELTDHNKESLFESGILAPLLDLVSHNDVQVKIVALKALQNLSSLKKNGLEMIRQGAARPLLNILFQHSIPSSSLWEHVAPIIMQLVASTTSQDAQTLVSLLEYDEDVFNLFFLINYKMPDVRQYTIQTFYALCQSPSASYIRTKLRECTAIQVLVKLFETENQKLRGSAVKLFSCLVEGCDEAIIL	218

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc121243g00012	218	Pfam	Armadillo/beta-catenin-like repeat	35	75	IPR000225	GO:0005515
	Stsc121243g00012	218	ProSiteProfiles	Armadillo/plakoglobin ARM repeat profile.	46	88	IPR000225	GO:0005515
	Stsc121243g00012	218	SUPERFAMILY	ARM repeat	5	216	IPR016024	-
	Stsc121243g00012	218	PANTHER	RING-TYPE E3 UBIQUITIN TRANSFERASE	1	212	-	-
	Stsc121243g00012	218	SMART	arm_5	35	75	IPR000225	GO:0005515
	Stsc121243g00012	218	SMART	arm_5	170	210	IPR000225	GO:0005515
	Stsc121243g00012	218	Gene3D	-	1	218	IPR011989	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121243g00012	Stsc-Chr121243	37704	38980	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc121243g00012	1	208	U-box Gene Family	AT1G20780	30.047	4.24e-12	63.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121243g00012	-		-	psat:127076110	305.834