Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121243g00011 ATGGTTGATCCTGTTGAAACTTCATCAGGTCAAACATTTGAAAGGAATGCAATTGAGAAGTGGTTTGCAGATGGAAACGAATTGTGTCCTCTAACTATGGTTCCTTTAGACACATCAATTTTGAGACCCAACAAAACCTTGAAACAATCAATAGAAGAGTGGAAAGACAGGAATACAATGATTACAATTGCCTCAGTGAAAGAAAAAATCCAATCAGGAGATGGTGAGGAAGTACTGCATTGTTTACAGAAGCTTCAAGACTTGTGTGAACAAAAGGGCCAGCACAGAGAATGGGTTTTACTGGAGAATTACATTCCAGTTCTTATCCGATTACTCGATGCTAAAAACCAGGATGTTAGGAGTAATGCCCTTGTTATCCTTTTCATGCTGGCAAAGGATAGTGAAGATGCCAAGGAAAGAATTGCAAATGTTGATAATGCAATTGAGTCTATTGTGCATTCTCTTGGTCGTCGTTTGGGGGAAAGGAAGTTAGCAGTGGCATTACTTCTAGAACTATCCAAATATGATTTAATAAAAGAACGCATTGGAAAAGTTCAAGGTTGCATACTGTTATTGGTGGCTATGTCCAGCAGTGATGACCATCAATCTGCCAGAGATGCAACAGAGCTGTTGGAAAACCTTTCATAA 648 0.3904 MVDPVETSSGQTFERNAIEKWFADGNELCPLTMVPLDTSILRPNKTLKQSIEEWKDRNTMITIASVKEKIQSGDGEEVLHCLQKLQDLCEQKGQHREWVLLENYIPVLIRLLDAKNQDVRSNALVILFMLAKDSEDAKERIANVDNAIESIVHSLGRRLGERKLAVALLLELSKYDLIKERIGKVQGCILLLVAMSSSDDHQSARDATELLENLS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121243g00011 215 SUPERFAMILY RING/U-box 1 60 - -
Stsc121243g00011 215 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 215 - -
Stsc121243g00011 215 Gene3D - 67 215 IPR011989 -
Stsc121243g00011 215 Pfam U-box domain 1 58 IPR003613 GO:0004842|GO:0016567
Stsc121243g00011 215 SMART Ubox_2 1 54 IPR003613 GO:0004842|GO:0016567
Stsc121243g00011 215 SUPERFAMILY ARM repeat 63 215 IPR016024 -
Stsc121243g00011 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 66 IPR013083 -
Stsc121243g00011 215 ProSiteProfiles U-box domain profile. 1 61 IPR003613 GO:0004842|GO:0016567
Stsc121243g00011 215 CDD RING-Ubox_PUB 1 41 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121243g00011 Stsc-Chr121243 36655 37682 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121243g00011 1 214 U-box Gene Family AT1G76390 32.287 1.13e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121243g00011 - - qsa:O6P43_027410 340.117