Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121242g00001 ATGGGAAGACGTCCTTGCTGCTCCAAAGAGATAAACAAAGGAGCTTGGTCAAGAGAAGAAGATGAAACCCTCTCCAAATATGTTGCCATCCATGGTGAAGGAAAATGGCAGAAGGTTGCCCAAAATGCTGGTTTGAAGAGGTGCGGGAAGAGTTGCAGACAGAGATGGTTGAATTATCTGAAGCCAGGCATTAAGAGAGGTGACATCTCTGAGGATGAAGAAGATATGATCATAAGACTTCATCGTCTTCTCGGAAACAGATGGGCTTTGATAGCAAAGAGGTTGCCGGGACGAACAGACAATGAAATTAAGAATTATTGGAATACGAATCTGTCTAAGAAGCTACAAATTCAACAAAATCAACAACAACCACCTCCTCCTCCATCTTCATCTTCTTCCCACAAACACAAACACAATCATGTAATAGTAACACCCCAAGCTACAATGCCTAGAAGAGGACTCAGAGCTGTTCATCACTACAACAAAATAATCTCCGACGACAATAACGACAATAACAACAACAATAACAGTTCAATTAATTGCCCCTGCAGTGATAATGAAGAAGCTTCTGTCACTGATTTCCTCATTGACATTGATGATGTTGATGATCAAATGCTGTTGGTTAACCCAATCGAAGAACATAGCAACGATGATAATAATAACAATAATAACAATAACAAGGTGTTATTAGGGTTAAGAAACAGTAGTAGTCCAAGCTCATCATCAGATCAATGTAACAACAAGTTGTTATTGTCCGAGAAATTTGACCCTTTGGAGAGACTTTTGGATTTGGAGCTAAAGAGGATGGCTTCATTTCTTGGACTAAAAAATTAA 834 0.3921 MGRRPCCSKEINKGAWSREEDETLSKYVAIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYLKPGIKRGDISEDEEDMIIRLHRLLGNRWALIAKRLPGRTDNEIKNYWNTNLSKKLQIQQNQQQPPPPPSSSSSHKHKHNHVIVTPQATMPRRGLRAVHHYNKIISDDNNDNNNNNNSSINCPCSDNEEASVTDFLIDIDDVDDQMLLVNPIEEHSNDDNNNNNNNNKVLLGLRNSSSPSSSSDQCNNKLLLSEKFDPLERLLDLELKRMASFLGLKN 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121242g00001 277 CDD SANT 70 111 IPR001005 -
Stsc121242g00001 277 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Stsc121242g00001 277 MobiDBLite consensus disorder prediction 164 184 - -
Stsc121242g00001 277 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Stsc121242g00001 277 FunFam MYB-related transcription factor 12 65 - -
Stsc121242g00001 277 FunFam Transcription factor TT2 69 141 - -
Stsc121242g00001 277 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Stsc121242g00001 277 CDD SANT 15 60 IPR001005 -
Stsc121242g00001 277 MobiDBLite consensus disorder prediction 212 245 - -
Stsc121242g00001 277 Gene3D - 6 66 - -
Stsc121242g00001 277 Gene3D - 69 143 - -
Stsc121242g00001 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Stsc121242g00001 277 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 216 - -
Stsc121242g00001 277 MobiDBLite consensus disorder prediction 116 138 - -
Stsc121242g00001 277 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
Stsc121242g00001 277 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Stsc121242g00001 277 MobiDBLite consensus disorder prediction 213 245 - -
Stsc121242g00001 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Stsc121242g00001 277 SMART sant 12 62 IPR001005 -
Stsc121242g00001 277 SMART sant 65 113 IPR001005 -
Stsc121242g00001 277 MobiDBLite consensus disorder prediction 166 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121242g00001 Stsc-Chr121242 7250 8924 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121242g00001 5 213 MYB Transcription Factor Family AT3G13540 42.857 2.45e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc121242g00001 Myb_DNA-binding 7.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121242g00001 K09422 - gmx:100101858 296.975