Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121240g00004 ATGCAGAACAAATCAAGTTTACTATCTTCAGAGGCTTTACCAATGGATGATGTAAATGCAGATGATCAAGATGCACTTTTTGACTCTTCAGATGCTGGCCCAATTGAGGATGATCCTGAAGAGGCTGAACTGAAGAAGGAAGCTTTGAAGGCTGCTCAAGAAGCAGTCTCCAAGCAAAAAAAGTTGACAAGTGCTTTTGACAGTGAATGCCTGAGGCTGCGCCAGTCTGGTGAGGCTGATCCACATTCACAGGAGGTTGCAGGAGCGAGTGACATTGATTTGCAAACTCCCTCAACCATGCCAGTGGCATCAACAGTTCAGACACCAGAATTGTTTAAAGGTTGTCTAAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTTGTTAATTGTTATGAGCAGGGTTTAAATGGCATACTTGCAGATGAGATGGGACTTGGAAAGACCATTCAGGCTATGGTTTTCTTGGCCCATTTAGCTGAGGAGAAAAATATATGGGGGCCTTTTCTGGTTGTTGCACCTGCATCCGTTTTAAACAATTGGAATGAGGAACTTGAGCGCTTTTGCCCTGAACTCAAGAGACTTCCTTATTGGGGAGGTGTTGCCGAGCGGTCAGTGCTTAGGAAAAGTATTAACCCAAAGGATCTTTACCGTAGGGAAGCTAAATTCCACATTGTCATCACTAGCTATCAGCTGTTAGTGCAAGACGAAAAGTTTTTTCGCCGTGTGAAATGGCAGTACATGGTTTTAGATGAGGCTCAAGCAATAAAAAATTCAACCAGCATAAGATGGAAGACACTCCTTAGCTTTAACTGTCGTAATCGCCTACTCCTTACTGGCACACCTATTCAGAATAATATGGCAGAGCTAATTGAGAACCATGCAGAACATGGTGGTACCTTGAATGAGCATCAACTGAATAGATTGATTGCTGCTCACTGCTCAGATCGTAACTTCTCCTATAAAATGATTGAAGAATTGCATGATCCTTGGGTTAAGAGGTTGTTTGTGGGATTTGCACGTACATCTGAATCTCTCGGGCCTAGAATGCCTGTTCGTTCTCCTCATCATTTAATTCAAGAGATTGATTCTGAACTACCTATTTCACACCCTGCACTTAAGTTCACGCATGATATTTTTGGCTGTTCACCACCGATGCATAATTTTGATCCAGCGAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATACTATTGAAACGCTTGCGAGCTGGAAATCATCGTGTTCTTTTGTTTGCTCAGATGACTAAGATGCTGAATATTTTGGAGGATTATATGAACTATAGAAGATACAAGTATTTTCGACTCGACGGATCATCTACCATTCAGGATCGCAGAGACATGGTCAAAGACTTCCAGCATAGGAGTGATGTTTTTGTGTTCTTACTGAGTACAAGGGCTGGTGGATTAGGTATCAATTTGACAGCTGCTGATACAGTGATATTTTATGAAAGTGACTGGAATCCAACATTGGATCTGCAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAGGAGACAGTTGAAGAGAAGATACTTCTTAGAGCAAGTCAGAAAAGTACTGTGCAGAACCTTGTCATGACTGGTGGTTCTGTTGGAGGTGATCTTTTAGCTCCGGAGGATGTCGTATCTTTGCTTTTGGATGATGTCCAACTTGAACAGAAATTAAAGGAAATCCCTATTCAGGTAAAGGATAAGGAAAAGAGAAAGCAACCAACTAAGGGTATACGTGTAAATGAAGATGGTGATGCATCTCTGGAGGATCTAACAAACTCTGCAGCCCAGGGTACTACAGATTTTGATCTCCCGATGGACCCAGAAGGATCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCTTCCAAACCAAGGAATTCTCAAAAGACGAGTGAATCTGGCAGTATGGCTATAGATTTTGAATTGGATGATAACCACCTAAGTACTGAACCAGTTGGCCACAAACCAAAGAGACCCAAACGGACGAAGAATGTAAATGAAGATTCTTTTACTGCATCGGCTTCCATATTCCCAGAGTAG 2091 0.4185 MQNKSSLLSSEALPMDDVNADDQDALFDSSDAGPIEDDPEEAELKKEALKAAQEAVSKQKKLTSAFDSECLRLRQSGEADPHSQEVAGASDIDLQTPSTMPVASTVQTPELFKGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMVFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPELKRLPYWGGVAERSVLRKSINPKDLYRREAKFHIVITSYQLLVQDEKFFRRVKWQYMVLDEAQAIKNSTSIRWKTLLSFNCRNRLLLTGTPIQNNMAELIENHAEHGGTLNEHQLNRLIAAHCSDRNFSYKMIEELHDPWVKRLFVGFARTSESLGPRMPVRSPHHLIQEIDSELPISHPALKFTHDIFGCSPPMHNFDPAKLLTDSGKLQTLDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRRYKYFRLDGSSTIQDRRDMVKDFQHRSDVFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGGDLLAPEDVVSLLLDDVQLEQKLKEIPIQVKDKEKRKQPTKGIRVNEDGDASLEDLTNSAAQGTTDFDLPMDPEGSKSSNKKRKAASKPRNSQKTSESGSMAIDFELDDNHLSTEPVGHKPKRPKRTKNVNEDSFTASASIFPE 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121240g00004 696 FunFam Photoperiod-independent early flowering 1 88 292 - -
Stsc121240g00004 696 FunFam DNA helicase INO80-like protein 370 621 - -
Stsc121240g00004 696 SMART ultradead3 112 312 IPR014001 -
Stsc121240g00004 696 PANTHER HELICASE SRCAP-RELATED 32 289 - -
Stsc121240g00004 696 MobiDBLite consensus disorder prediction 585 696 - -
Stsc121240g00004 696 SMART helicmild6 428 511 IPR001650 -
Stsc121240g00004 696 CDD SF2_C_SNF 390 522 - -
Stsc121240g00004 696 MobiDBLite consensus disorder prediction 660 682 - -
Stsc121240g00004 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 291 IPR027417 -
Stsc121240g00004 696 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 402 586 IPR001650 -
Stsc121240g00004 696 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 128 299 IPR014001 -
Stsc121240g00004 696 MobiDBLite consensus disorder prediction 585 603 - -
Stsc121240g00004 696 Gene3D - 89 292 IPR038718 -
Stsc121240g00004 696 Pfam Helicase conserved C-terminal domain 402 511 IPR001650 -
Stsc121240g00004 696 MobiDBLite consensus disorder prediction 1 50 - -
Stsc121240g00004 696 Pfam SNF2-related domain 131 290 IPR000330 GO:0005524|GO:0140658
Stsc121240g00004 696 Gene3D - 367 616 IPR027417 -
Stsc121240g00004 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 243 561 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121240g00004 Stsc-Chr121240 22460 34599 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121240g00004 362 532 RAD5 or RAD16-like Gene Family AT1G61140 33.889 1.44e-26 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Stsc121240g00004 SNF2_N 1.7e-38 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121240g00004 K11665 - gmx:100780615 631.328