Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121239g00005 ATGAGGATGAGTTGTAACGGATGCAGGGTCTTAAGAAAAGGTTGCAGCGAAGATTGTAGCATAAGACCATGCCTGAATTGGATAAAGAGCCCTGACTCCCAAGCCAATGCTACTATCTTCCTTGCCAAGTTCTACGGCCGTGCTGGCCTCATCAACCTCATCAACGCCGGCCCCGATCACCTTCGTCCTGCGATTTTTCGTTCGTTACTATATGAAGCATGCGGGCGAATAGTGAATCCGATATATGGATCAGTGGGCTTGTTGTGGTCGGGGAGCTGGCAGCTGTGCCAACTCGCCGTCGAGGCGGTTTTGAAGGGAGCGCCGATTACGCCGATAAATTCGGAGGTGGCGGAGAGTGGGCGGGGCCCACCCTTCAAGGCTCATCATGACATACGCCACGTGTCCAAGGCTGATAACAACAACACCGCAACTGAAACTAACAAGCGAGTCAAGACTCGCTCCCGAGTCAAGCGCTCTGCTGATGGAGACGTAATAAAGCCTAAGGAGGAGTCAACCGGAACCGGTTCGAGGCGGGCGTCGAGTCACGACTCGTCGCTGAGCCACGAACGGTTCGAGCCGGTTGCTATGGTTGTGGAGGGAGAGAGCAGGGAGATCGAAAGCGAGGTGTCGGTGGAGAATTCGGTTCGGTTCCATGACGAACCGGATTGTGATGGAAAGGGGAGTGGTGGTTCGGGGGAAGTGTGTGGGAAGGAGGTTGGGTTGGAGCTGAGGCTGGGGTTTGAACCGGTGTCACGTGAGGAGCACGTTGTGGTGCCAATGAAAAAGAGGAGAATTGATTTGAAGGATTTTTGTGGCGGGGTAAGTGGTGATAACGGTTCGTGCAAGATGGAGCTGGGGCTTCAGTTTTGA 870 0.5414 MRMSCNGCRVLRKGCSEDCSIRPCLNWIKSPDSQANATIFLAKFYGRAGLINLINAGPDHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQLAVEAVLKGAPITPINSEVAESGRGPPFKAHHDIRHVSKADNNNTATETNKRVKTRSRVKRSADGDVIKPKEESTGTGSRRASSHDSSLSHERFEPVAMVVEGESREIESEVSVENSVRFHDEPDCDGKGSGGSGEVCGKEVGLELRLGFEPVSREEHVVVPMKKRRIDLKDFCGGVSGDNGSCKMELGLQF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121239g00005 289 MobiDBLite consensus disorder prediction 122 136 - -
Stsc121239g00005 289 MobiDBLite consensus disorder prediction 156 191 - -
Stsc121239g00005 289 Pfam Lateral organ boundaries (LOB) domain 4 103 IPR004883 -
Stsc121239g00005 289 MobiDBLite consensus disorder prediction 207 231 - -
Stsc121239g00005 289 ProSiteProfiles LOB domain profile. 3 109 IPR004883 -
Stsc121239g00005 289 PIRSF AS2 1 273 IPR017414 -
Stsc121239g00005 289 MobiDBLite consensus disorder prediction 207 226 - -
Stsc121239g00005 289 PANTHER LOB DOMAIN-CONTAINING PROTEIN 38 3 200 - -
Stsc121239g00005 289 MobiDBLite consensus disorder prediction 114 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121239g00005 Stsc-Chr121239 33289 35207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121239g00005 1 287 AS2 family AT3G02550 56.794 3.78e-101 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc121239g00005 LOB 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121239g00005 - - aprc:113867933 348.591