Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121238g00003 ATGGCAGAAGAGAGATACAGCGGCGTAGTTCAGTGGTTCAACATCTCGAAGGGCTTCGGCTTCATCAAGCCCGACCAAGGGGGAGACGACCTCTTCGTCCACCACTCATCCATTCAATCTGACGGCGCTTTTCGAACCCTAGTTGATGGCGATCGCGTCGAGTTCTCCATTGATAACAACGACGACAAGCCCAAGGCTCTTGACGTCACTGGCCCCAATGGCGCTCCTCTCCGGAGCACTCATGACTCTGGTTACTCCTCACGCGCTGGTGCCGATAGCAGACGCAGCGCTGCTGCTGGAGGAGGCAGAGGAGGATGCTACCAGTGTGGTGATTTTGGCCACATTGCTAGGGATTGCAACCGTGCTGGCAATGGTGGCGGCGGCGGCGGCGGCGGCGGTGCTTGCTACAGTTGCGGCGGATTTGGTCACATGGCTAGGGATTGCGTCAGTGCAGGTGGCGGCGGCGGAGGAGGAGCAAACGGTGGGGGTTGCTTTAAGTGTGGTGAGTTAGGGCACATGGCGAGGGACTGCAGTGCCGGAGGCGGAGGTGGGAATGGTGGTGGTTGCTTTAAGTGTGGTGAGTTTGGGCACATGGCGAGGGACTGCAGTGGCGGAGGAGGCGGTGGCAGTAACGGTGGTGGTTGCTATAGGTGTGGAGAGGTTGGTCACTTGGCTAGGGATTGCAATAGAGAAGGTGGTGGCGGCGGTGCTGGTGGGAACGGTGGAAAGAGCACATGCTACAATTGTGGGAAGCCTGGGCATTTTGCTAGGGAGTGCGTTGAGGCCTCTGGTTAG 795 0.5874 MAEERYSGVVQWFNISKGFGFIKPDQGGDDLFVHHSSIQSDGAFRTLVDGDRVEFSIDNNDDKPKALDVTGPNGAPLRSTHDSGYSSRAGADSRRSAAAGGGRGGCYQCGDFGHIARDCNRAGNGGGGGGGGGACYSCGGFGHMARDCVSAGGGGGGGANGGGCFKCGELGHMARDCSAGGGGGNGGGCFKCGEFGHMARDCSGGGGGGSNGGGCYRCGEVGHLARDCNREGGGGGAGGNGGKSTCYNCGKPGHFARECVEASG 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121238g00003 264 ProSiteProfiles Zinc finger CCHC-type profile. 106 119 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 MobiDBLite consensus disorder prediction 59 101 - -
Stsc121238g00003 264 ProSiteProfiles Zinc finger CCHC-type profile. 135 148 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Stsc121238g00003 264 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Stsc121238g00003 264 SMART csp_8 7 72 IPR011129 GO:0003676
Stsc121238g00003 264 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Stsc121238g00003 264 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Stsc121238g00003 264 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Stsc121238g00003 264 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Stsc121238g00003 264 ProSiteProfiles Zinc finger CCHC-type profile. 246 259 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 Pfam Zinc knuckle 245 259 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 Pfam Zinc knuckle 105 119 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 Pfam Zinc knuckle 163 178 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 Pfam Zinc knuckle 214 228 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 Pfam Zinc knuckle 134 148 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 Pfam Zinc knuckle 188 203 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Stsc121238g00003 264 ProSiteProfiles Zinc finger CCHC-type profile. 164 177 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 SUPERFAMILY Retrovirus zinc finger-like domains 155 204 IPR036875 GO:0003676|GO:0008270
Stsc121238g00003 264 SUPERFAMILY Retrovirus zinc finger-like domains 215 261 IPR036875 GO:0003676|GO:0008270
Stsc121238g00003 264 Gene3D - 6 85 IPR012340 -
Stsc121238g00003 264 ProSiteProfiles Zinc finger CCHC-type profile. 215 228 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 SUPERFAMILY Retrovirus zinc finger-like domains 100 150 IPR036875 GO:0003676|GO:0008270
Stsc121238g00003 264 ProSiteProfiles Zinc finger CCHC-type profile. 189 202 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 SMART c2hcfinal6 188 204 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 SMART c2hcfinal6 245 261 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 SMART c2hcfinal6 163 179 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 SMART c2hcfinal6 105 121 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 SMART c2hcfinal6 214 230 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 SMART c2hcfinal6 134 150 IPR001878 GO:0003676|GO:0008270
Stsc121238g00003 264 Gene3D - 100 156 - -
Stsc121238g00003 264 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Stsc121238g00003 264 Gene3D - 237 264 - -
Stsc121238g00003 264 Gene3D - 185 209 - -
Stsc121238g00003 264 Gene3D - 159 184 - -
Stsc121238g00003 264 Gene3D - 210 236 - -
Stsc121238g00003 264 PANTHER COLD SHOCK DOMAIN PROTEIN 2 204 261 - -
Stsc121238g00003 264 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121238g00003 Stsc-Chr121238 12480 13611 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Stsc121238g00003 CSD 1.4e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121238g00003 K09250 - gmx:106796585 282.722