Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121234g00006 ATGGCAAAATATATACCTAAAACAGGTTCGCGTAAAAATGTACGTATTGGTTCGCGGAATCATACGCGTAAAATACCAAAAGGAATTATTCATGTTCAAGCTAGTTTCAACAATACTATTGTAACTATTACAGATGTACGAGGTCGGGTGATTTCTTGGTCCTCCGCTGGTACTTGTGGATTCAAGGGTACACGAAGGGGAACACCTTTTGCCGCTCAAACTGCAGCAGGAAATGCTATTCGAACAGTATCGGATCAAGGCATGCAACGAGCAGAAATCATGATCAAAGGGCCTGGTCTCGGAAGAGATGCAGCATTAAGAGCTATTCGTAGAAGTGGTATACTCTTAAATTTTATACGAGATGTAACTCCTATGCCACATAATGGATGTAGGTCTCCTAAAAAAAGACGTGTACCGAAACCATTAAAAGAACGCCCAATAACTTATTGGGCACTGTACGAAGTATTTGAAATACGGGAAAGAAATACCATTCTGGTAGTATTTCCAAAGGAGTTGCAAAAGGATCCGCGGGTTCCCCAATCATGGATGGTTCTAGAACCGCTAAGCCTACGTTACAGGCAATAG 585 0.4171 MAKYIPKTGSRKNVRIGSRNHTRKIPKGIIHVQASFNNTIVTITDVRGRVISWSSAGTCGFKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDAALRAIRRSGILLNFIRDVTPMPHNGCRSPKKRRVPKPLKERPITYWALYEVFEIRERNTILVVFPKELQKDPRVPQSWMVLEPLSLRYRQ 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121234g00006 194 Gene3D Ribosomal protein S11 9 138 IPR036967 GO:0003735|GO:0005840|GO:0006412
Stsc121234g00006 194 FunFam 30S ribosomal protein S11, chloroplastic 11 138 - -
Stsc121234g00006 194 PANTHER 40S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11 23 136 IPR001971 GO:0003735|GO:0005840|GO:0006412
Stsc121234g00006 194 SUPERFAMILY Translational machinery components 23 138 - -
Stsc121234g00006 194 Hamap 30S ribosomal protein S11 [rpsK]. 3 138 IPR001971 GO:0003735|GO:0005840|GO:0006412
Stsc121234g00006 194 NCBIfam 30S ribosomal protein S11 21 135 IPR019981 GO:0003735|GO:0005840|GO:0006412
Stsc121234g00006 194 Pfam Ribosomal protein S11 28 137 IPR001971 GO:0003735|GO:0005840|GO:0006412
Stsc121234g00006 194 ProSitePatterns Ribosomal protein S11 signature. 106 128 IPR018102 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121234g00006 Stsc-Chr121234 42459 44534 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121234g00006 28 128 Cytoplasmic Ribosomal Protein Gene Family AT3G52580 34.545 2.93e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121234g00006 K02948 - gmx:3989330 266.159