Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121233g00003 ATGGGAAGAGGGAGAGTAGTTCTTGAGAGAATAGAGAACAAGATAAACAGGCAAGTGACATTTTCAAAGAGAAGGAGTGGATTGTTGAAGAAAGCTTTTGAGTTATCGGTGCTTTGTGATGCTGAAGTTGCTCTTATCATCTTCTCTAGCCGTGGCAAGCTTTTTCAGTATAGCAGTTCCGACATTAGTAGAATTATTGAGAGGTATCGTCAATGCCGTTACAACAAGTTGTCAAATGCTGGAAATTTGTTTGATCAGCAATCACAGAACTTGTACCAGGAATTCTTGAAATTAAAGGTAAAATATGAATCTCTGGAGAGGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCCCTTGGCATGAAGGAATTGATGAATCTTGAGAAACAAGTAGAAAGAACTCTTTCACAAGCTCGACAGATCCATATGAAGAAGCTCATAGCAAGACAGGCCGAATTAAGTGAAAAGGTGCACGAGGACCAGGAGCTCAACAAAAAGTTGAAATCCAAGATAAACGATGAATTCCCGGACCTAATTGCTGAGCATAACAACAACCCTATTCATCACTTGAATAATAATGAAGCACAACACATTAATCAGCAGTTCCAGTCTGACACAATCTTAAACACTACATGTATTTTCCAGCATCATCAAGATGGAAAAGCAAGTGATGCAATCCAACAAGATGGTCAGAGCAGCCATGACGAAAACAACAATGGTTGGCTTGTGTGA 735 0.3973 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSSRGKLFQYSSSDISRIIERYRQCRYNKLSNAGNLFDQQSQNLYQEFLKLKVKYESLERTQRHFQGEELEPLGMKELMNLEKQVERTLSQARQIHMKKLIARQAELSEKVHEDQELNKKLKSKINDEFPDLIAEHNNNPIHHLNNNEAQHINQQFQSDTILNTTCIFQHHQDGKASDAIQQDGQSSHDENNNGWLV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121233g00003 244 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Stsc121233g00003 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc121233g00003 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc121233g00003 244 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc121233g00003 244 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Stsc121233g00003 244 MobiDBLite consensus disorder prediction 225 244 - -
Stsc121233g00003 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc121233g00003 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc121233g00003 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc121233g00003 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc121233g00003 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc121233g00003 244 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Stsc121233g00003 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 200 - -
Stsc121233g00003 244 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc121233g00003 244 Coils Coil 122 142 - -
Stsc121233g00003 244 MobiDBLite consensus disorder prediction 223 244 - -
Stsc121233g00003 244 FunFam MADS-box transcription factor MADS-MC 13 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121233g00003 Stsc-Chr121233 24236 28243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121233g00003 1 195 MADS-box Gene Family AT2G45650 51.244 3.00e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc121233g00003 K-box 1.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121233g00003 K09264 - gmx:100793681 285.034