Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121231g00002 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAACAGATCGGAAGAGGTGCTTTTGGAGCTGCCATCCTTGTAAATCACAAAGCAGAGAAGAAAAAATATGTGTTGAAGAAAATCAGGCTTGCTAGGCAGACTGAAAGATGCAGAAGATCTGCACATCAAGAGATGGCTCTTATTGCTAGAATCCAGCATCCTTACATTGTAGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGTATTGTTACCGGATACTGTGAAGGAGGAGACATGGCTGAGTTGATGAAGAAAACAAATGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAGTTACTCTTGGCAGTGGAATACTTGCATTCAAATTTTGTTTTACATCGCGACCTAAAGTGTTCCAACATTTTTCTTACCAAGGATCAAGATGTTCGCCTGGGGGATTTTGGGCTCGCTAAGACGCTAAAAGCAGATGATTTGGCTTCATCGGTGGTTGGAACTCCCAATTACATGTGTCCTGAACTGCTTGCGGATATTCCCTATGGATTCAAATCTGATATCTGGTCACTAGGGTGCTGTATATATGAGATGGCTGCTCATCGCCCGGCTTTTAAAGCTTTTGATATGGCAGGACTGATAAGCAAGATAAATCGTTCGTCTATTGGCCCATTGCCTCCTTGTTATTCCCCTTCCTTGAAAACACTGATAAAGGGTATGCTAAGAAAAAATCCAGAGCATCGGCCTACAGCATCGGAAGTTTTAAAACATCCTTACTTGCAACCTTATGTTGATCAATATCGTCCGGCTTTTAGTTCTCCAACATCCTGTTCTCCAGGAAAACCGATTTCATCCGTCATTTATTCTCGGAAAAATATGGCTGAAAGTCAAAGCAGTACTAGTTCAAGCAGTGACAAAGACAGTTTGATGTCACATGAGAGACACATTGTGACATCAGTGCCGGAGCATAACAAAGCCACCGAGACTGATATGGCATCAATTGATGACGATAGCTCTGAGAATATCCTTGCTAGTGAAGAAGAAAACTGCTCTAGTAATGTCAATGCCAAAGCAACTGAGCAAGAAGTGACGAAACCGTCCTATAATGAGCTATGCTCTAATAATGAATCTAAGCAGCCGAAAACAATTAGAAATATAATGATGGCGTTAAAAGAAGGAAAACTTAGAGAAGCAAATTCTCCGATGAGAGGCAATCGCATAAAGCCTGTTGGTGTATCAACACCAAAAGCAAATATAGAGACGACATCCAAATTGCCAAAACCCAATTTCACGGTTCCTGGATTGAAGCCAAATGTAGAGTCACCAGCTGTTGCACATTCAAAGGGATCCCCTGACTCCGCAAAACGAATACAAGGATCAAATCCTTCGAAGCATCAGTCACCAGTGGCAGAATCTTCACCAAAAGCAAAACCGAGGCATGATTTGACTTCACCATCTGGCAATGTCAAACCAGTAGAGGGAGATGGACTTCCTGATAGAACATTGCAAAGGACTCCCCCTACCTTAATTAGACGACCTTCATTTCCAGCTCGAATGAAGCCAGTTGGACTTGATGTTCCGAATGCAGCAAATGATAATGGGAAATCAGGTTCAAATAGAACTCAGGAGCCCGAGATTAGCCGTTGTCAGTTAACCAATGGCAATGTACCACATGTTTCTAGACCAGCTGCTAGAGAGCCCCAGAAGGCTTTTGGCCGAAGCTCCAAAGCAATGCAAACAGACAGCAGTAATTCTGCATCGTCTTCGGTCTCTATTCAAGGATGTGAAATTTATGATGATGCAACAATTTTTATTGACATGAGAGAAGAGACACTTCCTGATAGTGAGGATGTAGTCCACGATGTAGGTGCAGAATCGTGTCGAGACAGCGGCCCGCCTACAACCTGTTCACATTGTAAGAAGGTTGAAAAGGTTTGCAACGAGACTGATGAGGTTACTCTCAGTTTTCGGAACACTACTAGTAGCAATGAGAAAATGGATTCAAGGATAAGTCTTGATCACCCTATTGAAGATTCTAAGGCTACTTTTGCATCAGAAGAAAGCCTTCATGTAAACCATACAAATATCAATGTTTCATCTGGATGTGATAATAAATCTGTAGGCCATCATGCTGAAGCCGCAGATGAAATCATAGATAATCAAGATATTTCTAAGGAAATAACATTAACCACGCCTATCCAACATCCACTCGAAAGCTCTGCAGAAACGCCGGTTTATGATGGTGTTTCTGTAAGGAAGTCTGATGGTAAGTCTGAAATAGTTTGTCAGCCGGAACCTGTGTGTAAGTCCTCTGGCGATGACAAATTCACAGTGAGGGAGAGATTATCATCAGTGGCTGAAACTGCTCCGGTGATTACAACTACTAAGCTATCAAGCCAGAAAGTCTTGCAAGAGGAAGGAACTGTCATGCCGAATCCAGCATCAGAAAGGCCGGACGCTGGCCATCTTCCTCCAGCCTTTGATGATGTCATCCATGTAATACGCCATAGCAGTTACCGCGTTGGAAGTGAGCAGCCAGCGAAGGAATCTCTCGAGAAAGGAGTTCAAAATTTAGATGTTGGTAAGTTCATCAATGTTGCGAGGGATGATGTGGAAGCAAGAAATGCAAGCCCTCCTTTGACATTGAAATCTTCTAGCTGCTCTGAACCTCCAAGCACTAAACCAAATACTTCTGATCAGTTGGAAATGAGAAACAATAGCACTCCGCCGACCCTTAAACCTTCAAGTTTCTCTGATTCTTCATGCATGAAATCAAGTATTTCTGATCATTCTGGTCCTAAGGAACAAGATGCGAGCAACCCGGTTTCATTAGTTTCTGAATCTAATCCCACTGAGTTGAGTAAAAACAATACTCCTTCAACCGAAGATAAACCGCCAGCAAAGGAAATACTGGATGTGAAATCTTTCAGGCAGAGAGCCGAGGCGCTTGAAGAGCTCCTAGAATTGTCTGCAGATTTGCTGCAGCAAAATAGATTGGAGGAACTTCAAGTCGTTCTGAAGCCCTTCGGGAAAGATAAGGTTTCCCCAAGGGAGACAGCGATTTGGCTAGCGAAAAGTCTGAAAGGAATGATGTCCGAGGAAAGCGGAGGACGCAGTTCATGA 3129 0.4314 MESRMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKTNGAYFPEEKLCKWFTQLLLAVEYLHSNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGCCIYEMAAHRPAFKAFDMAGLISKINRSSIGPLPPCYSPSLKTLIKGMLRKNPEHRPTASEVLKHPYLQPYVDQYRPAFSSPTSCSPGKPISSVIYSRKNMAESQSSTSSSSDKDSLMSHERHIVTSVPEHNKATETDMASIDDDSSENILASEEENCSSNVNAKATEQEVTKPSYNELCSNNESKQPKTIRNIMMALKEGKLREANSPMRGNRIKPVGVSTPKANIETTSKLPKPNFTVPGLKPNVESPAVAHSKGSPDSAKRIQGSNPSKHQSPVAESSPKAKPRHDLTSPSGNVKPVEGDGLPDRTLQRTPPTLIRRPSFPARMKPVGLDVPNAANDNGKSGSNRTQEPEISRCQLTNGNVPHVSRPAAREPQKAFGRSSKAMQTDSSNSASSSVSIQGCEIYDDATIFIDMREETLPDSEDVVHDVGAESCRDSGPPTTCSHCKKVEKVCNETDEVTLSFRNTTSSNEKMDSRISLDHPIEDSKATFASEESLHVNHTNINVSSGCDNKSVGHHAEAADEIIDNQDISKEITLTTPIQHPLESSAETPVYDGVSVRKSDGKSEIVCQPEPVCKSSGDDKFTVRERLSSVAETAPVITTTKLSSQKVLQEEGTVMPNPASERPDAGHLPPAFDDVIHVIRHSSYRVGSEQPAKESLEKGVQNLDVGKFINVARDDVEARNASPPLTLKSSSCSEPPSTKPNTSDQLEMRNNSTPPTLKPSSFSDSSCMKSSISDHSGPKEQDASNPVSLVSESNPTELSKNNTPSTEDKPPAKEILDVKSFRQRAEALEELLELSADLLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGRSS 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121231g00002 1042 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Stsc121231g00002 1042 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Stsc121231g00002 1042 MobiDBLite consensus disorder prediction 455 472 - -
Stsc121231g00002 1042 MobiDBLite consensus disorder prediction 397 590 - -
Stsc121231g00002 1042 MobiDBLite consensus disorder prediction 533 559 - -
Stsc121231g00002 1042 SMART serkin_6 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121231g00002 1042 Gene3D Transferase(Phosphotransferase) domain 1 90 342 - -
Stsc121231g00002 1042 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 667 - -
Stsc121231g00002 1042 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
Stsc121231g00002 1042 Pfam Protein kinase domain 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121231g00002 1042 CDD STKc_Nek 7 262 - -
Stsc121231g00002 1042 MobiDBLite consensus disorder prediction 294 308 - -
Stsc121231g00002 1042 SUPERFAMILY Protein kinase-like (PK-like) 4 319 IPR011009 -
Stsc121231g00002 1042 FunFam Serine/threonine-protein kinase Nek5 90 336 - -
Stsc121231g00002 1042 MobiDBLite consensus disorder prediction 880 965 - -
Stsc121231g00002 1042 ProSiteProfiles Protein kinase domain profile. 8 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121231g00002 1042 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Stsc121231g00002 1042 MobiDBLite consensus disorder prediction 294 314 - -
Stsc121231g00002 1042 MobiDBLite consensus disorder prediction 877 971 - -
Stsc121231g00002 1042 MobiDBLite consensus disorder prediction 575 590 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121231g00002 Stsc-Chr121231 25501 30868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121231g00002 12 379 MAP Kinase Kinase Kinase AT3G06030 28.792 3.98e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Stsc121231g00002 Pkinase 8.3e-66 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121231g00002 K08857 - gmx:100784761 1436.01