Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121230g00003 ATGGCTATAGATCTTCTCTCCCCTGCCATAATTCCAACCATAGCAACAATATTAGCAGCATTAGTGGCCGTCGACCTCATCCTCCGCCATATTCGCGGCCACCGGTACAATCTTCCACCAGGCCCAAAACCATGGCCCATCATAGGAAACCTAAACCTCATTGGATCCCTCCCTCACCGGTCCGTCCACTCTCTCAGCCAAAAATATGGGCCCATCATGCACCTGTGGTTCGGCTCCCACCCTGTGGTAGTGGGCTCATCAGTAGAAATGGTCAGATCTTTTCTGAAAACACACGACGCCGCCATCGCTGACCGGCCCAAATTCTCCGCCGGAAAGTACACAACGTACAACTATTCCGACATAACGTGGTCTCAGTACGGCCCGTACTGGCGTCAGGCCCGCAGAATGTGCCTCATGGAGCTCTTCAGCGCAAAACGCCTCGAATCTTACGAGTACATAAGAAGAGAAGAGATGTTCAATCTGTTGAACGATCTTTTCAAGTGTTCTAAGTCTAACGGAACGGTGTTGTTGAAGGATCATCTTTCAACGCTGAGTTTGAATGTGATAAGCCGCATGGTGCTTGGGAAGAAGTACACGGAGACGGAGAAAGAGGAGAACGCGATTATATCGCCGGACGAATTCAAGAAGATGCTGGACGAGTTGTTCTTGCTGAACGGTGTGCTTAATTTAGGGGACTTTATCCCTTGGATTCACTTCTTGGACTTGCAGGGGTATGTGAAGAGGATGAAGGCTTTGGCTAAGAAGTTTGATAGGTTTATGGAGCATGTGTTGGATGAACACATCGAGAGGAGGAAAGCAGTGAAGGGTTATGTTGCCAAGGACATGGTTGATGTGCTTTTGGAGCTTGCCGAGGATCCTAATCTTGAGGTCAAGCTTGAGAGGCATGGCGTCAAAGCATTTAGTCAGGATTTGATAGCCGGTGGAACAGAGAGCTCTGCCGTTACAGTAGAATGGGCAATCTCGGAGCTACTGAAACAGCCAGAGATTTTCAAGAAAGCAACAGAAGAGCTAGACAGAGTGATAGGAAGAGAGCGATGGGTTGAAGAGAATGACATTGTCAATTTACCTTACATTTACGCCATCGCTAAGGAGACAATGAGGCTACACCCCGTGGCACCAATGCTGGTGCCACGGAAAGCCCGTGAAGATGTTAAGATCAACGGCTTCGATGTCCCTAAAGGGACACAAGTGCTAGTAAATGTTTGGAGTGTTGGCCGAGACCCTAAGATTTGGGACAACCCAACTGAGTTCCAACCAGAGAGGTTTCTTGGTAAAGACATAGATGTGAGAGGCCATGACTATGAGTTGTTGCCGTTTGGTGCTGGTAGAAGAATGTGCCCTGGTTACCCTCTTGGACTCAAGGTGATTCAATCAAGCTTGGCTAATTTGTTGCATGGCTTTAATTGGAGACTACCTAACAATATGAAGAAAGAGGACTTGAATATGGAGGAAATTTTTGGGCTTTCCACCCCAAAGAAATATCCTCTGGAAGTAGTTGTTGAGGCTAGATTTCCCAGTCATCTTTATTCCATCTGA 1557 0.4753 MAIDLLSPAIIPTIATILAALVAVDLILRHIRGHRYNLPPGPKPWPIIGNLNLIGSLPHRSVHSLSQKYGPIMHLWFGSHPVVVGSSVEMVRSFLKTHDAAIADRPKFSAGKYTTYNYSDITWSQYGPYWRQARRMCLMELFSAKRLESYEYIRREEMFNLLNDLFKCSKSNGTVLLKDHLSTLSLNVISRMVLGKKYTETEKEENAIISPDEFKKMLDELFLLNGVLNLGDFIPWIHFLDLQGYVKRMKALAKKFDRFMEHVLDEHIERRKAVKGYVAKDMVDVLLELAEDPNLEVKLERHGVKAFSQDLIAGGTESSAVTVEWAISELLKQPEIFKKATEELDRVIGRERWVEENDIVNLPYIYAIAKETMRLHPVAPMLVPRKAREDVKINGFDVPKGTQVLVNVWSVGRDPKIWDNPTEFQPERFLGKDIDVRGHDYELLPFGAGRRMCPGYPLGLKVIQSSLANLLHGFNWRLPNNMKKEDLNMEEIFGLSTPKKYPLEVVVEARFPSHLYSI 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121230g00003 518 CDD CYP71_clan 70 503 - -
Stsc121230g00003 518 Gene3D Cytochrome P450 29 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 PANTHER CYTOCHROME P450 98A9 15 517 - -
Stsc121230g00003 518 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 PRINTS E-class P450 group I signature 323 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 PRINTS E-class P450 group I signature 407 431 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 PRINTS E-class P450 group I signature 303 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 PRINTS E-class P450 group I signature 366 384 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 PRINTS E-class P450 group I signature 184 202 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 PRINTS P450 superfamily signature 314 331 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 PRINTS P450 superfamily signature 367 378 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 SUPERFAMILY Cytochrome P450 39 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Stsc121230g00003 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Stsc121230g00003 518 FunFam Cytochrome P450 84A1 30 511 - -
Stsc121230g00003 518 Pfam Cytochrome P450 39 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121230g00003 Stsc-Chr121230 13096 16416 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121230g00003 16 518 Cytochrome P450 AT5G07990 41.553 2.52e-137 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121230g00003 K20623 - gmx:100790480 854.358