Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121227g00001 ATGCAAACGGCAACGAGAGCGGAAGCCGAACGCCTACTCGGGATCGCAGAAAAGCTCCTACAGACCCGCGATCTCAACGGCTCCCGCGAATTCGCCGTCCTCGCCCAAGAAACCGAGCCTCTTCTAGAAGGTTCCGACCAGATCCTCGCCATCGTCGACGTCCTCTTAGCCGCCGATAATCGTCCAAACACCGCTGCCGGCCACCCCCACCACCACCAACCCGACTGGTACGGCGTCCTCCAGGTGGACCGCCGCAGCAACGACCTCGACCTCATCAAGCGCCACTACCGCCGCCTCGCCCTCCTCCTCCACCCGGACAAGTGCCGCTTTGCTTACGCCGACCACGCCTTCAAGCTTGTCGTCGACGCCTGGGCAGTGCTCTCAGACCCAATCAAGAAGTCCAACTACGACAAGGAGCTCTCCTTCTTCTCCCGAGTCGACCTCTCTGTTCCCGGCTGGGTTCAGCAAGACAAGCTCCCGGTCCGTAGAACCGGACCTGGGCCTGGGCCAGGGCCGGGGCCTAGCGCCAGGGCAAATAATAACAGTACCACCATAAACTTCGACGGCATGAACATCAGCATGAGTAATAACACACCCGCGTCCGCCGCGAGGAACGAGATTGCGACCGACGAGAATTCGAACGCCAGGCTGCGGCAGGGACAGAACAGATCGGGAAATTTCTGGACCTCGTGTCCGTACTGCTATAGGTTGTATGAGTACCCTAGGGTTTACGAGGGTTGCTGCTTGAGGTGCCAGAATTGCGATAGGTCCTTCCATGGTATCTCGATTCCTTCGCTGCCCCCGTTGGTGCCGGGGCAGGATGCTTATTACTGTTGCTGGGGCTTCTTTCCGATGGGGTTTGTGGTTGGGAATGTAGGATCTGCTGAGAAAGAGCATGCGCCGGCCCCGGTCTCGGCTGCGGTTCTGGCGCCAGTCGCGGTTGCAACTCCCCAGGCTCCGTCATCACTGCCGAATTGGATGCCTGCCGCAGCTGTTCAGGAGAATGGGGGAAATGTTGCTGTGCCGGTTGCAACCCCGACACCTGCTAGGGTGGCTGTGAGAGGAAGTGTTTCGAATGGAATTGCTGGATCTGGGTCTGGGCCGAAGAAGAGAGGAAGGCCGCGGAAGTATCCGCTGCAGTCGTGA 1146 0.5951 MQTATRAEAERLLGIAEKLLQTRDLNGSREFAVLAQETEPLLEGSDQILAIVDVLLAADNRPNTAAGHPHHHQPDWYGVLQVDRRSNDLDLIKRHYRRLALLLHPDKCRFAYADHAFKLVVDAWAVLSDPIKKSNYDKELSFFSRVDLSVPGWVQQDKLPVRRTGPGPGPGPGPSARANNNSTTINFDGMNISMSNNTPASAARNEIATDENSNARLRQGQNRSGNFWTSCPYCYRLYEYPRVYEGCCLRCQNCDRSFHGISIPSLPPLVPGQDAYYCCWGFFPMGFVVGNVGSAEKEHAPAPVSAAVLAPVAVATPQAPSSLPNWMPAAAVQENGGNVAVPVATPTPARVAVRGSVSNGIAGSGSGPKKRGRPRKYPLQS 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121227g00001 381 MobiDBLite consensus disorder prediction 354 381 - -
Stsc121227g00001 381 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 333 - -
Stsc121227g00001 381 ProSiteProfiles dnaJ domain profile. 75 140 IPR001623 -
Stsc121227g00001 381 MobiDBLite consensus disorder prediction 157 181 - -
Stsc121227g00001 381 SMART dnaj_3 74 132 IPR001623 -
Stsc121227g00001 381 SUPERFAMILY Chaperone J-domain 68 140 IPR036869 -
Stsc121227g00001 381 CDD DnaJ 75 129 IPR001623 -
Stsc121227g00001 381 Pfam DnaJ domain 75 137 IPR001623 -
Stsc121227g00001 381 ProSitePatterns Nt-dnaJ domain signature. 117 136 IPR018253 -
Stsc121227g00001 381 Gene3D DnaJ domain 63 147 IPR036869 -
Stsc121227g00001 381 PRINTS DnaJ domain signature 77 95 IPR001623 -
Stsc121227g00001 381 PRINTS DnaJ domain signature 96 111 IPR001623 -
Stsc121227g00001 381 PRINTS DnaJ domain signature 112 132 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121227g00001 Stsc-Chr121227 8816 11351 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121227g00001 223 379 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 44.643 2.27e-39 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121227g00001 - - gmx:100816918 474.552