Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121222g00002 ATGGAGTTCTGGGGTGTTGAAGTGAAAAGCGGAGAAACTCTCGAGGTTGATCCAGGATATGGCAAGATTATCCATCTCTCGATGGCATGCCTGGGTGAGGTTAAGAAGGATAAAGGCGAACCGGTAACTGTGTATGTGAAATTCGGTGACCGGAAGCTTGTGATTGGAACACTTACTTCTGAGAATTTCCCTCAGATATCTTATGATTTAATATTTGAGAAGGAATTTGAGCTATCACATAACTGGAAAAATGGGAGTGTCTTCTTTACTGGATATAAAGCCGAACCTCCGGCGGAATCTGAAAATGAAGAAGACTCTGAAGAGTTTGAAGATATTCCAGTTGCTGCTGCCAATGGAAATTCTGAGCTCGAGGGAAATAATGCTGTCAAACTTGATGCGAATGAAGCTAAACAAAAGGAGAAAACAGGGGATCCAAGAAAGAAAGAGAAGGAAAATGAAAACAATGCAAATGATGAAGATGAGGAAGATTCATCTGAACCTGATTCTGAAGAGGATACTAGTGAAGATGAGGCCATGGCAAATGGTGAGAAAGGTGAAGATGACTCTGATGATGATGATGACGAGGATGAGGATGACTCCGATGACTCCGATGAGGAGACACCCAAGAAGGCTGACTTGAACAAAAAGAGGGCTCATGAATCGTCTAAGAAAACACCTGTTCCTGAGAAGAAGGCGAAATTTGTTACTCCGGAGAAGATTGAGAACAAGGCTGGTGTTCATGTTGCAACTCCTTACCCCACTAAGCAGGCTATCAAGGCGGCTGCCAATAACAGGCAGCCAGTGAAGCAGCAAACTCCAAAGTCAGTTGGAGACTATGGCTGCAATCCTTGCAAAAGGTCTTTTAAGACAGAAGAGGCCTTGAACTCCCATAACAAGGCCAAACACAGTGACAAGTGA 918 0.4368 MEFWGVEVKSGETLEVDPGYGKIIHLSMACLGEVKKDKGEPVTVYVKFGDRKLVIGTLTSENFPQISYDLIFEKEFELSHNWKNGSVFFTGYKAEPPAESENEEDSEEFEDIPVAAANGNSELEGNNAVKLDANEAKQKEKTGDPRKKEKENENNANDEDEEDSSEPDSEEDTSEDEAMANGEKGEDDSDDDDDEDEDDSDDSDEETPKKADLNKKRAHESSKKTPVPEKKAKFVTPEKIENKAGVHVATPYPTKQAIKAAANNRQPVKQQTPKSVGDYGCNPCKRSFKTEEALNSHNKAKHSDK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121222g00002 305 Pfam Nucleoplasmin-like domain 3 92 IPR041232 -
Stsc121222g00002 305 MobiDBLite consensus disorder prediction 206 238 - -
Stsc121222g00002 305 Gene3D Nucleoplasmin core domain 1 97 - -
Stsc121222g00002 305 MobiDBLite consensus disorder prediction 155 205 - -
Stsc121222g00002 305 FunFam Histone deacetylase HDT1 1 98 - -
Stsc121222g00002 305 MobiDBLite consensus disorder prediction 261 277 - -
Stsc121222g00002 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 279 305 IPR013087 -
Stsc121222g00002 305 MobiDBLite consensus disorder prediction 261 281 - -
Stsc121222g00002 305 MobiDBLite consensus disorder prediction 133 154 - -
Stsc121222g00002 305 ProSitePatterns Zinc finger C2H2 type domain signature. 281 302 IPR013087 -
Stsc121222g00002 305 MobiDBLite consensus disorder prediction 118 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121222g00002 Stsc-Chr121222 4960 8466 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121222g00002 1 117 C2H2 Transcription Factor Family AT5G03740 47.541 1.29e-36 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc121222g00002 NPL 1.5e-11 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121222g00002 - - ccaj:109796568 342.043