Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121218g00007 ATGGAGGAAATGTACGGAGTCCCGTCCACGGCGGACTACGCCGAAAAAGCCCTCATGACGCCGGAGAATCTGATCTTCCCTGTAGCTGACTACCACAGCTTCCTCATGTCCGCTTCCTCTTCCTCCTCCGCCTCCGCCGCCGCAGCTACGATTCCTATGCTCGGATCCGACGAGCTTCTCTCTGCCGCCGGAATTCAACAGCAGCAGCAGCAGACACCGCATAACAGCGAGGCCATGGCCTCCACCGTGATGAAAGCCAAAATCGCTTCTCATCCTCAATACCCTCGCCTCCTTCAAGCTTACATCGATTGCCAGAAGGTCGGCGCGCCTCCAGAAATCGCGTGTTTGTTGGAGGAAATTCGCCAAGAAAACGACCTTTGCAAGAGAGACGACGTCGTTTCCACGTGCTTCGGAGCCGATCCCGAGCTCGACGAGTTCATGGAAACGTACTGTGAGTTGCTGGTGAAGTATAAATCGGACCTGGCTAGGCCGTTCTATGAAGCAACGAGCTTCCTTAACAAGATCGAAATGCAGTTAAGCCATCTCTGCTGCAACGGTGCTTCTGTTTCAACTCTTTCTGATGATGGGGCTGTGTCTTCAGAAGAAGATTTTAGTGCTGGAGATGGTGATGGTCAAGATGGTCAATCAAGAGGCGAGGATCGTGAGCTGAAGGATAAGCTTTTGCGCAAGTTTGGGAGCCACATTGGTACTTTGAAATTGGAGTTCTCTAAGAAGAAAAAGAAGGGTAAGCTGCCTAAGGAAGCAAGGCAAACACTTCTTCAGTGGTGGAATGTTAACTACAAATGGCCTTATCCTACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGATCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAGCGTCACTGGAAGCCATCTGAGAATATGCAATTTTCTATGATGGAAAATCTTGGAGCCCGATTCCTTCCAGATGAATGA 978 0.4918 MEEMYGVPSTADYAEKALMTPENLIFPVADYHSFLMSASSSSSASAAAATIPMLGSDELLSAAGIQQQQQQTPHNSEAMASTVMKAKIASHPQYPRLLQAYIDCQKVGAPPEIACLLEEIRQENDLCKRDDVVSTCFGADPELDEFMETYCELLVKYKSDLARPFYEATSFLNKIEMQLSHLCCNGASVSTLSDDGAVSSEEDFSAGDGDGQDGQSRGEDRELKDKLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVNYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLGARFLPDE 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121218g00007 325 Pfam Homeobox KN domain 262 301 IPR008422 GO:0003677|GO:0006355
Stsc121218g00007 325 ProSitePatterns 'Homeobox' domain signature. 280 303 IPR017970 GO:0000981|GO:0006355
Stsc121218g00007 325 ProSiteProfiles ELK domain profile. 222 242 IPR005539 GO:0003677
Stsc121218g00007 325 SMART ELK_2 222 243 IPR005539 GO:0003677
Stsc121218g00007 325 MobiDBLite consensus disorder prediction 197 220 - -
Stsc121218g00007 325 ProSiteProfiles 'Homeobox' domain profile. 242 305 IPR001356 GO:0003677
Stsc121218g00007 325 Pfam ELK domain 222 243 IPR005539 GO:0003677
Stsc121218g00007 325 SUPERFAMILY Homeodomain-like 243 314 IPR009057 -
Stsc121218g00007 325 Pfam KNOX2 domain 137 183 IPR005541 GO:0003677|GO:0005634
Stsc121218g00007 325 SMART KNOX2_2 133 184 IPR005541 GO:0003677|GO:0005634
Stsc121218g00007 325 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 66 312 - -
Stsc121218g00007 325 Pfam KNOX1 domain 84 125 IPR005540 GO:0003677|GO:0005634
Stsc121218g00007 325 Gene3D - 241 314 - -
Stsc121218g00007 325 SMART HOX_1 244 309 IPR001356 GO:0003677
Stsc121218g00007 325 SMART KNOX1_2 82 126 IPR005540 GO:0003677|GO:0005634
Stsc121218g00007 325 CDD homeodomain 254 306 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121218g00007 Stsc-Chr121218 24576 32903 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121218g00007 1 325 Homeobox Transcription Factor Family AT1G23380 61.310 3.30e-139 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Stsc121218g00007 KNOX2 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121218g00007 - - gmx:100794719 461.84