Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121218g00005 ATGAAGAGAGTAGTCTCTTTCATCTCCTATCAATGCTTTGTTTTCCTGATCATTGAAGCACTGTTACTATCAGGAACTTCAACGGCAGAACCAAGGGCGAAAACGATCCAAGTTACATGTGGCAATCAATTCGAGCACAACAACACCGTCTTTGTTCCGAATTTTGTTAAAGCCATGGACAATATCACTGCACAGATTAGCACTGATATCTTTGCAACAGCAGTCGCAGGAACAGGACCTGACACTAACTATGGCCTTTTTCAGTGCTATGGAGATCTTTCCTTATACGATTGTGCATTATGTAATGCCGAGGCACGCACGGTTATTGCCGGATGCTTCCCTTATAACGGTGGTCGCATTTACCTTGATGGCTGTTTCATGAGGGTTCAGAACTATCGTTTCTTTAATGAGTATTCAGGAGCAGGACACAAGGCTTTATGTGGTAACAGAACTAGGAAGAGCTCGAGTTTTCAAGCAGCGGCAAAGCAAGCAATTTCAACAGCAGTTCAAGATCCACCAAACAACCGCGGCTATGCTAGAGGTAAGGTTGCTGTGTCGGGAACAACTAACGAATCCGCTTATGTTCTGGCTGATTGTTGGAGGAATTTGGACCCAAGCTCTTGCAAAGCATGTCTTGAGAATGCATCTTCTTCTATATTGGGATGCTTGCCTTGGTCGGAAGGGCGAGCACTTAACACTGGTTGCTTCATGAGGTACTCAGACACAGATTTTCTCAACAAGGAACAGGAAAATGGGAGCTCAAAAGTGAATGTAGTAGTGCTAATTGTTCCAATAGTCAGTTCAGTGGTTGTTCTGCTGGTTGGAATTGTTATTGGGATTTATATCTGGAAACACAGATACATTCAAAAGAAAAGAAGAGGTTCATATGATGCAAAAAAACTAGCAAAGTCCCTTCACTGCAGTGGCTTGAATTTCAAGTACTCTACACTGGAAAAGGCTACTGGATCCTTTGATGATGCTAACAAATTAGGCCAAGGAGGATTCGGAACAGTTTATAAGGGAGTTCTATCTGATGGAAGACAGATTGCTGTCAAGAGGTTATATTTCAACAACAGACATAGAGCTGCGGATTTCTACAATGAAGTTAACATAATTAGCCGAATAGAACAGAAGAATCTAGTTAGACTGTTAGGATGCAGCTGTTCGAGAACTGACAGCTTGCTCGTATATGAATTTCTTCCCAATAGAAGTCTTGACCACTTCATTTTCGACAGAAATAAAGGAAGGGAACTGAAATGGGCGAAGAGATATGAAATTATTGTTGGGACAGCTGAAGGACTAGTTTACCTGCATGAGAACTCTGAAATCAGGATAATCCACAGAGATATAAAAGCCAGCAACATCCTATTGGATGCAAAGCTCCGTGCGAAAATTGCAGATTTCGGTTTGGCTAGATCCTTTCAAGAAGACAAGAGCCACATAAGTACAGCTATAGCAGGAACTTTGGGTTATATGGCTCCAGGGTACTTAGCTCATGGTCAGTTAACAGAAAAGGTCGATGTATATAGTTTCGGAGTGTTATTGTTAGAGACAATTACCGGAAGACAGAACGGCAGGGGCAAAGTAGCAACGGAATATTCAGACAGCACAGAATATTCAGAGAGCCTAGTTACAATAGTATGGAAGCATTTTCAGATGGGGACTGCAGAAGAATTATTTGATCCAAATCTTCAGTTGCATAACCACAACAGCAGCAATGTTAAGAATGAGGTTTTAAGAGTGGTTCATATAGGTCTTCTATGCATCCAAGAGAACCCTACACTGAGACCAACTATGTCAAAGGCACTACAGATGTTAACAAAGAAGGAGGAGCACCTTGCTGCTCCCTATAATCCACCCTTCCTATATGAGAGTACTATGGAGCTGCATGACATGAGTAGCGACCCGTCTTCCCCTCTTAATGTACCAGGATCGATTGCTACCGTGTCCCATAGCTCTTTTTATCCGAGGTGA 1974 0.423 MKRVVSFISYQCFVFLIIEALLLSGTSTAEPRAKTIQVTCGNQFEHNNTVFVPNFVKAMDNITAQISTDIFATAVAGTGPDTNYGLFQCYGDLSLYDCALCNAEARTVIAGCFPYNGGRIYLDGCFMRVQNYRFFNEYSGAGHKALCGNRTRKSSSFQAAAKQAISTAVQDPPNNRGYARGKVAVSGTTNESAYVLADCWRNLDPSSCKACLENASSSILGCLPWSEGRALNTGCFMRYSDTDFLNKEQENGSSKVNVVVLIVPIVSSVVVLLVGIVIGIYIWKHRYIQKKRRGSYDAKKLAKSLHCSGLNFKYSTLEKATGSFDDANKLGQGGFGTVYKGVLSDGRQIAVKRLYFNNRHRAADFYNEVNIISRIEQKNLVRLLGCSCSRTDSLLVYEFLPNRSLDHFIFDRNKGRELKWAKRYEIIVGTAEGLVYLHENSEIRIIHRDIKASNILLDAKLRAKIADFGLARSFQEDKSHISTAIAGTLGYMAPGYLAHGQLTEKVDVYSFGVLLLETITGRQNGRGKVATEYSDSTEYSESLVTIVWKHFQMGTAEELFDPNLQLHNHNSSNVKNEVLRVVHIGLLCIQENPTLRPTMSKALQMLTKKEEHLAAPYNPPFLYESTMELHDMSSDPSSPLNVPGSIATVSHSSFYPR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121218g00005 657 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Stsc121218g00005 657 FunFam Cysteine-rich receptor-like protein kinase 2 400 614 - -
Stsc121218g00005 657 FunFam Cysteine-rich receptor-like protein kinase 2 33 134 - -
Stsc121218g00005 657 ProSiteProfiles Protein kinase domain profile. 324 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121218g00005 657 Gene3D Phosphorylase Kinase; domain 1 285 399 - -
Stsc121218g00005 657 Gene3D - 32 134 IPR038408 -
Stsc121218g00005 657 Gene3D - 143 244 IPR038408 -
Stsc121218g00005 657 SMART serkin_6 324 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121218g00005 657 Pfam Salt stress response/antifungal 151 241 IPR002902 -
Stsc121218g00005 657 Pfam Salt stress response/antifungal 43 132 IPR002902 -
Stsc121218g00005 657 FunFam Cysteine-rich receptor-like protein kinase 3 143 244 - -
Stsc121218g00005 657 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Stsc121218g00005 657 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 85 634 - -
Stsc121218g00005 657 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Stsc121218g00005 657 FunFam Putative DUF26-domain receptor-like protein kinase family protein 293 399 - -
Stsc121218g00005 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Stsc121218g00005 657 Gene3D Transferase(Phosphotransferase) domain 1 400 617 - -
Stsc121218g00005 657 SUPERFAMILY Protein kinase-like (PK-like) 308 637 IPR011009 -
Stsc121218g00005 657 Pfam Protein kinase domain 326 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121218g00005 657 CDD STKc_IRAK 330 608 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121218g00005 Stsc-Chr121218 12925 15758 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121218g00005 12 657 Receptor kinase-like Gene Family AT1G70520 62.037 0.0 795
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121218g00005 Pkinase 2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121218g00005 - - lja:Lj2g3v1415230.1 1002.66