Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121218g00003 ATGGCTCCAGAGTACATAGCTCATGGTCAGTTAACAGAAAAGGCAGATGTGTATAGTTTCGGCGTCCTACTGCTAGAGACAGTAACCGGGAGACAGAACAACAGGAGCAAAGCAACAGAATATTCAGACAGCTTAATTACAGTGGCATGGAAGCATTTTCAGTCAGGGACAGCTGAACAATTATTTGATCCAAATCTTCAGTTGCATGAAGACTACAACAACAGCAGTGTTAAGAATGAGATCTTAAGAGTGGTTCAAATAGGACTTCTATGCACCCAAGAGAACCATTTGTTGCGGCCAACTATGTCGAAAGTGCTACAGATGTTAACAAAGAAGGAGGAGCGACTTGCTGCTCCTTCTAATCCACCTTTTCTAGATGAGAATACCATGGAGTTCCATGACACAAGTGGTGACCCATTTTTCCCTCTCGTTGCAGATGACTCGATCGCTACCATGTCCTATAGCTCTTTTCATCCCAGGTGA 483 0.4369 MAPEYIAHGQLTEKADVYSFGVLLLETVTGRQNNRSKATEYSDSLITVAWKHFQSGTAEQLFDPNLQLHEDYNNSSVKNEILRVVQIGLLCTQENHLLRPTMSKVLQMLTKKEERLAAPSNPPFLDENTMEFHDTSGDPFFPLVADDSIATMSYSSFHPR 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121218g00003 160 Gene3D Transferase(Phosphotransferase) domain 1 1 122 - -
Stsc121218g00003 160 ProSiteProfiles Protein kinase domain profile. 1 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121218g00003 160 SUPERFAMILY Protein kinase-like (PK-like) 1 134 IPR011009 -
Stsc121218g00003 160 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 1 132 - -
Stsc121218g00003 160 Pfam Protein tyrosine and serine/threonine kinase 1 109 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121218g00003 Stsc-Chr121218 7089 7663 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121218g00003 1 160 Receptor kinase-like Gene Family AT1G70520 62.112 2.88e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121218g00003 PK_Tyr_Ser-Thr 2.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121218g00003 - - gmx:100305420 267.314