Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121218g00001 ATGTTCCACGGGCTTCTAGTATCATCTTGTTGTTGCTTGAGGTATTCAAATAACAAGTTCTATAATAGTAACTCAAGCAGTGTTGTTGCCCCTTTCCGAAACCAAGGACATAGTAACCTTCCCATAATTGTGGCTGCATCATCATCTACCTTGGCTCTGCTGCTGATCATTGTAATGGTTGCTTTCTTTGTAAGAATGAATATATTGAAGCAGAGAAGAGAAAGAAGACAGTTTGGTACCCTTTTGGAAACAGTGAACCAGTCTAAACTAAATATGTCATATGAAGTTCTTGAACAAGCAACAAATTACTTCAATGATTTCCATAAGCTAGGAGAAGGAGGAACAGGTTCAGTTTACAAAGGAGTTCTGCCAGATGGAAAAACTGTAGCCATAAAAAGGCTTAGCTTTATCACAACACAATGGGCAGATCATTTTTTCAATGAGGTCAATTTGATTAGTGGGATTCAACACAAAAATCTTGTGAAGCTTTTAGGTTGCAGCATCACAGGACCTGAAAGCCTTCTTGTTTATGAATATGTGCCTAATGGGAGCCTCTCTGTTCATCTCTGTGTTAGAAAGAAATCTGAAGGGTTGAATTGGGAAATGAGGCTTAAGATCATGTTGGGAACTGCAGAGGGGTTGGCCTATCTTCATGAGGAATCACAGATGAGAATCATTCATAGAGATATAAAATTGGGCAATGTTCTACTTGATGAAAACTTCACACCCAAGATTGCTGATTTTGGACTTGTTAGATTGTTCCCAGAAGAAAATTCTCACCTTAGCACAACCATTGCTGGCACACTGGGTTACATGGCTCCTGAATATGTAATTCTAGGGAAATTAACCGAAAAAAGCAGATGTCTACAGTTTCGGAGTTTTAGTCATTGA 891 0.3883 MFHGLLVSSCCCLRYSNNKFYNSNSSSVVAPFRNQGHSNLPIIVAASSSTLALLLIIVMVAFFVRMNILKQRRERRQFGTLLETVNQSKLNMSYEVLEQATNYFNDFHKLGEGGTGSVYKGVLPDGKTVAIKRLSFITTQWADHFFNEVNLISGIQHKNLVKLLGCSITGPESLLVYEYVPNGSLSVHLCVRKKSEGLNWEMRLKIMLGTAEGLAYLHEESQMRIIHRDIKLGNVLLDENFTPKIADFGLVRLFPEENSHLSTTIAGTLGYMAPEYVILGKLTEKSRCLQFRSFSH 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121218g00001 296 ProSitePatterns Protein kinases ATP-binding region signature. 110 132 IPR017441 GO:0005524
Stsc121218g00001 296 Pfam Protein kinase domain 105 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121218g00001 296 SMART serkin_6 104 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121218g00001 296 SUPERFAMILY Protein kinase-like (PK-like) 86 286 IPR011009 -
Stsc121218g00001 296 FunFam Os07g0541700 protein 180 268 - -
Stsc121218g00001 296 ProSiteProfiles Protein kinase domain profile. 104 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121218g00001 296 FunFam Cysteine-rich receptor-like protein kinase 2 70 179 - -
Stsc121218g00001 296 Gene3D Transferase(Phosphotransferase) domain 1 180 286 - -
Stsc121218g00001 296 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 9 286 - -
Stsc121218g00001 296 Gene3D Phosphorylase Kinase; domain 1 64 179 - -
Stsc121218g00001 296 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121218g00001 Stsc-Chr121218 1338 3784 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121218g00001 3 269 Receptor kinase-like Gene Family AT1G70530 59.551 3.40e-112 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121218g00001 Pkinase 2.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121218g00001 - - aip:107643328 494.967