Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121213g00001 ATGGAAGGAAGAGAAGGCATTAGTTCTGGAGTTACAGTGATAGGGGCAGAAGCTCCATCAGCATATCATGTGGCACCAAGGAGTGAAGCTCCAAACCAGGTTCATGTGCCTGAGGCAGGCACGGTGGCTGCGGCTGCGGCCGGGGTTTCTCCGGTGAGCGTGGGGATGGACGGAACGACGATTAAGAAGAAACGGGGTAGACCGAGGAAATATGGGCCGGATGGATCTGTCACTATGGCATTGACACCATTGCCACTGTCATCTTCAGCTCCACATTCAAATGACTTTTCGTCCGGTAAACGGGGGAAATCAAAGGGTATGGAGTACAAGCAGTCGAAAAAACTCGGGTTTGATCAACTAGGTGAATATCATTCATGTGCTGATGGTACAAACTTTCTGCCACATATCATCACAGTTAATGCTGGAGAGGACATTACCATGAAGGTTATATCGTTTTCTCAGCAAGGACCGCGAGCTATATGCATCTTATCTGCTAGTGGTGTAATTTCGAATGTCACGCTTCGTCAACCTGATTCTTCTGGTGGCACTTTGACCTATGAGGGCCGTTTCGATATACTTTCTTTATCCGGATCATTCATGCCCACTGACAACCAAGGAACAAGAAGCCGGTCGGGCGGGATGAGCGTCTCGTTGGCAAGCCCTGATGGTCGTGTTGTAGGTGGTGGTGTTGCCGGACTTCTTGTTGCCGCCAGTCCGGTACAGGTGGTGGTGGGAAGTTTCTTGCCAAGCAACCAACAAGATCAGAAACCAAAGAAGCCGAAGTCATCCGATTATTCCACGCCCGTCGTCACCCCGACGGTCATCACGATGTCTTCCGCACCGAATCACCCAAGCAATGCTGAGAAAGATGATCATGTGATGGGTGGTGCACGCCATGTGATGCAAAACTCATCATCTAACCTCACCCCTTCTCCCTTCAGAAGAGAAAATTGGGTGAACATGCACTCCATGCAACATGACTCGAGAAAGTCGGCTACCGACATCAACATCTCTTTGCCAGATAGTTAA 1029 0.4976 MEGREGISSGVTVIGAEAPSAYHVAPRSEAPNQVHVPEAGTVAAAAAGVSPVSVGMDGTTIKKKRGRPRKYGPDGSVTMALTPLPLSSSAPHSNDFSSGKRGKSKGMEYKQSKKLGFDQLGEYHSCADGTNFLPHIITVNAGEDITMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFDILSLSGSFMPTDNQGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLPSNQQDQKPKKPKSSDYSTPVVTPTVITMSSAPNHPSNAEKDDHVMGGARHVMQNSSSNLTPSPFRRENWVNMHSMQHDSRKSATDINISLPDS 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121213g00001 342 MobiDBLite consensus disorder prediction 81 97 - -
Stsc121213g00001 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 134 247 IPR005175 -
Stsc121213g00001 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 315 IPR039605 GO:0003680
Stsc121213g00001 342 MobiDBLite consensus disorder prediction 250 269 - -
Stsc121213g00001 342 CDD DUF296 134 224 IPR005175 -
Stsc121213g00001 342 ProSiteProfiles PPC domain profile profile. 129 271 IPR005175 -
Stsc121213g00001 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 132 250 - -
Stsc121213g00001 342 Gene3D - 134 262 - -
Stsc121213g00001 342 MobiDBLite consensus disorder prediction 56 108 - -
Stsc121213g00001 342 FunFam AT-hook motif nuclear-localized protein 1-like 134 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121213g00001 Stsc-Chr121213 17363 21668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121213g00001 6 339 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 51.648 4.36e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121213g00001 - - gmx:100796830 509.99