Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121211g00004 ATGGAACTGAGTTCACATCAGCGTCANNNNNNNNNNCCCAAGCTGGTTCTTGGGTTATTGTTTATGGGAGCAGGGGTTGCCTTCTATGCCAATAGAGGAGAAATGACTGCTCAGCTACTTCAGCAGCCAGATGTTATGGTGACCAGTGTTGAAGAAGCTTCGAGTAGTGCAAAGCCATTGATTAAGCAACTAAAGAAACTCCCCAAGAAAATAAAGAAAATTATTGCATCATTACCTCAGCAAGAGGTAAATGAAGAAGAAGCCTCCCTCTTTGACGTGCTGTGGTTATTACTTGCAAGCGTTATATTTGTGCCAATATTTCAAAAACTTCCCGGAGGCAGCCCTGTTCTTGGCTACTTGGCTGCTGGAATCTTAATTGGGCCTTATGGTCTCTCTATAATTCGACATGTTCATGGGACAAAGGCAATTGCTGAATTTGGTGTTGTTTTCCTTTTATTCAACATTGGCCTGGAGCTCTCTGTTGAAAGACTTAGTTCAATGAAGAAATATGTCTTTGGATTAGGCTCAACACAGGTTTTGGCCACTGCTGTAGTTGTCGGCTTGGTGGCTCGTATTTGTGGCCAAGCTGGTCCTGCTGCTATTGTCATTGGGAATGGCCTGGCATTATCATCGACTGCTGTTGTTCTGCAGGTGTTGCAGGAGAGAGGTGAGAGCACATCACGGCATGGACGAGCTACATTCTCTGTTTTACTTTTTCAGGATTTGGCAGTTGTGGTTTTGCTGATACTTATTCCTCTAATTTCACCCAATTCTTCCAAAGGAGGGGTTGGTTTTCAAGCCATTGCTGAAGCTCTTGGGTTGGCTGCTGTTAAGGCAGCTGTTGCCATTACTGCCATAATCGCAGGTGGACGATTGCTCCTTCGACCAATATATAAGCAGGTTGCAGAAAATCAAAATGCCGAAATATTCTCGGCTAACACACTACTTGTTATTCTTGGGACCAGTCTTCTTACAGCCAGGGCAGGGCTTTCAATGGCATTGGGAGCATTTTTGGCTGGTTTACTACTGGCGGAAACTGAATTTTCGTTACAGGTTGAATCTGATATTGCTCCATACCGTGGCCTTCTTTTGGGGTTATTCTTTATGACGGTTGGAATGTCAATTGATCCAAAACTTCTTGTTTCAAACTTCCCAGTTATCACCACCACACTGGGACTGTTAATATGCGGCAAGACTCTCTTGGTTGCTGTCATCGGTAAAGTCTTTGGGATTTCTATCATTTCTGCCATAAGAACTGGCCTTCTTCTCGCTCCTGGTGGAGAATTTGCATTTGTGGCTTTTGGTGAAGCTGTCAATCAGGTTTTTGTCCTCAAACATGTTTCTTCTACGAGAGTAGTGTGCTCATATTTTACTCCAGTCTCCAGGCCTTCTTATTCATGTAAAATAAGTCACTTGGCTGGAGTTTGTATAACAAATGGATGA 1443 0.4331 MELSSHQRXXXXPKLVLGLLFMGAGVAFYANRGEMTAQLLQQPDVMVTSVEEASSSAKPLIKQLKKLPKKIKKIIASLPQQEVNEEEASLFDVLWLLLASVIFVPIFQKLPGGSPVLGYLAAGILIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERLSSMKKYVFGLGSTQVLATAVVVGLVARICGQAGPAAIVIGNGLALSSTAVVLQVLQERGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEALGLAAVKAAVAITAIIAGGRLLLRPIYKQVAENQNAEIFSANTLLVILGTSLLTARAGLSMALGAFLAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLVSNFPVITTTLGLLICGKTLLVAVIGKVFGISIISAIRTGLLLAPGGEFAFVAFGEAVNQVFVLKHVSSTRVVCSYFTPVSRPSYSCKISHLAGVCITNG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121211g00004 480 PANTHER K(+) EFFLUX ANTIPORTER 3, CHLOROPLASTIC 42 451 - -
Stsc121211g00004 480 Gene3D - 86 468 IPR038770 -
Stsc121211g00004 480 FunFam K(+) efflux antiporter 2 chloroplastic 86 459 - -
Stsc121211g00004 480 Pfam Sodium/hydrogen exchanger family 94 447 IPR006153 GO:0006812|GO:0015297|GO:0016020|GO:0055085|GO:1902600
Stsc121211g00004 480 NCBIfam monovalent cation:proton antiporter-2 (CPA2) family protein 97 376 IPR004771 GO:0006812|GO:0008324|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121211g00004 Stsc-Chr121211 37899 44707 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121211g00004 13 449 Inorganic Solute Cotransporters AT4G00630 81.960 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121211g00004 K03455 - gmx:100818163 664.07