Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121208g00007 ATGCATTCCTTTCACCTGATCAAGTTTCTAATTATTATCTCCACAACATTATGGTTTTTCCTCTCCTTGCACACTTGTTCTTCTACTTCATCATCAGATGCCAATGATGATAATAAACTTCCTTTCCCACATGTTTGTAACTGCACAATTAACAGAACCTTTGATTCAGACAGTTCCTACCATACCAACCTAAAAACTCTTCTATCATGGCTTTCTTCCAATGCCACTAACCGCGCTGGATCCCACATCACCAAGATTGTTTCCCCTGGTGATAACAGCAGTGTGTACGGCCTGTTCCAGTGTAATGCCGATGTTTCGCCGGAGAAATGCAAAATGTGTATTGATCAAGCAGTGAATAATGTAACATCAGAGTGTACAACATCAAAGGAAGCCGCGGTATTTGTTAGGTTCTGCTTCCTACGCTACTCTGATAGAGATTTCTTTGGAAAAGCAGATGAAAACCCGAGAATCTTCTTGCTGAACCTTGAGGACTACGGTGGCCATGTTTCTACCTTCAACAAGGAAGTGTCGGACATGATGTACACTCTGAGGCATGTGGTTGCTGATGAAATTCCCGAGGGTTCTAGAAGGTTCGCGTACATGGAACAGAACATGAAGGATAATAGAAGTAGAACACTTTATGGCATGGCAAAGTGCACCCCGGACTTGCCCCCTGATGAATGCAACTCGTGTCTTGTAGACGCCGTGGCCAAAATTACGGAAGTTTGTTGCAAAGGAAAGATCGGTGGAAGGGTTTTTTTCCCCAGTTGTGGCCTTAGATTTGAGCTTCGTCGATTTTATGTCCTATCATCTCAGATAAGAATTTTGAAACCTGAAACTGGAGTTGGGGATGAATCATTGGCTTCTTTTGAGTCTTTACAATTTCAGTTGAGTGAAATTGAAGCTGCTACAAACAATTTTTCTGAAGGAAACAAAATAGGAAGAGGTGGATTTGGGGAAGTTTACAAGGGTATTCTTCAAGATGGGCAAGAAGTAGCAGCAAAGAGACTCTTGGGAAACTCTTGGCAAGGTGCAGAAGAATTCAAGAATGAGGTTCTTGTTATGGTCAAGCTTCAACATAAAAATCTGGTCAAATTACTCGGGTTTTGTTTGGAAGGACAAGAGAGGATACTTGTCTATGAATATGTCGCCAACAAGAGCCTTGACTACATCTTATTTGATCCCCAAAGGAGGAGGCGATTAACTTGGTCTGAACGATACAACATCATTAGAGGAATTGCGCGGGGAATTTTATATCTTCACGAAGATTCTCGTTTAAAAATCATTCATCGAGATCTCAAACCAAGTAATATTTTATTAGACCATGGTATGAATCCAAAAATATCAGATTTCGGCATGGCAAGGATAGTAGTTACTGATCAAATCCAAGTGAATACTCATAGGGTTGTTGGCACATAG 1419 0.4109 MHSFHLIKFLIIISTTLWFFLSLHTCSSTSSSDANDDNKLPFPHVCNCTINRTFDSDSSYHTNLKTLLSWLSSNATNRAGSHITKIVSPGDNSSVYGLFQCNADVSPEKCKMCIDQAVNNVTSECTTSKEAAVFVRFCFLRYSDRDFFGKADENPRIFLLNLEDYGGHVSTFNKEVSDMMYTLRHVVADEIPEGSRRFAYMEQNMKDNRSRTLYGMAKCTPDLPPDECNSCLVDAVAKITEVCCKGKIGGRVFFPSCGLRFELRRFYVLSSQIRILKPETGVGDESLASFESLQFQLSEIEAATNNFSEGNKIGRGGFGEVYKGILQDGQEVAAKRLLGNSWQGAEEFKNEVLVMVKLQHKNLVKLLGFCLEGQERILVYEYVANKSLDYILFDPQRRRRLTWSERYNIIRGIARGILYLHEDSRLKIIHRDLKPSNILLDHGMNPKISDFGMARIVVTDQIQVNTHRVVGT 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121208g00007 472 Pfam Protein kinase domain 308 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121208g00007 472 ProSiteProfiles Gnk2-homologous domain profile. 41 147 IPR002902 -
Stsc121208g00007 472 ProSiteProfiles Gnk2-homologous domain profile. 153 266 IPR002902 -
Stsc121208g00007 472 SUPERFAMILY Protein kinase-like (PK-like) 286 472 IPR011009 -
Stsc121208g00007 472 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 110 472 - -
Stsc121208g00007 472 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Stsc121208g00007 472 Pfam Salt stress response/antifungal 48 144 IPR002902 -
Stsc121208g00007 472 Pfam Salt stress response/antifungal 169 262 IPR002902 -
Stsc121208g00007 472 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase B120 383 472 - -
Stsc121208g00007 472 SMART serkin_6 307 470 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121208g00007 472 ProSiteProfiles Protein kinase domain profile. 307 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121208g00007 472 ProSitePatterns Protein kinases ATP-binding region signature. 313 335 IPR017441 GO:0005524
Stsc121208g00007 472 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 272 382 - -
Stsc121208g00007 472 Gene3D - 43 147 IPR038408 -
Stsc121208g00007 472 Gene3D - 161 266 IPR038408 -
Stsc121208g00007 472 Gene3D Phosphorylase Kinase; domain 1 272 382 - -
Stsc121208g00007 472 Gene3D Transferase(Phosphotransferase) domain 1 383 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121208g00007 Stsc-Chr121208 36634 38787 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121208g00007 19 472 Receptor kinase-like Gene Family AT3G45860 40.153 6.85e-101 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121208g00007 Pkinase 6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121208g00007 - - aip:107619407 675.241