Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121208g00006 ATGTCTCCTGAATATGCAATGGAAGGAGTATTTTCGATAAAGTCTGATGTGTTCAGTTTTGGAGTTATAATACTAGAGATTATCAGTGGAAGATCGAAAAATTCTTTTTCTGAACCACACTTCTCAGATGACATCCGAGCTTTTGCATGGGCAAAATGGAAGGAAGAGAAGACATTGGAATTCTTGGAAACGAGTTTAAGAGGAAACTATTCTGAAAATGAAGTGGTGAGAAGTATACAGATAGCCCTGTTATGTGTTCAAGATGATCCAAATGAGAGGCCTACAATGACAGAAATTGTGTCATACTTCAACAGTTCTTCAGAGGAAGTACCTTTACCTCAAGAACCAATACTTTCAAAAAGTAAAAAGATGGAGTATATGACTTCTAAATCCCATTCCATAAATGATTCTATCAACGAATTGTCTGTGAGCACATTCCTCCCTAGATAA 450 0.3644 MSPEYAMEGVFSIKSDVFSFGVIILEIISGRSKNSFSEPHFSDDIRAFAWAKWKEEKTLEFLETSLRGNYSENEVVRSIQIALLCVQDDPNERPTMTEIVSYFNSSSEEVPLPQEPILSKSKKMEYMTSKSHSINDSINELSVSTFLPR 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121208g00006 149 ProSiteProfiles Protein kinase domain profile. 1 118 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121208g00006 149 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 1 144 - -
Stsc121208g00006 149 Gene3D Transferase(Phosphotransferase) domain 1 1 127 - -
Stsc121208g00006 149 SUPERFAMILY Protein kinase-like (PK-like) 1 132 IPR011009 -
Stsc121208g00006 149 Pfam Protein tyrosine and serine/threonine kinase 1 102 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121208g00006 Stsc-Chr121208 35995 36530 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121208g00006 1 149 Receptor kinase-like Gene Family AT4G11490 41.333 2.23e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121208g00006 PK_Tyr_Ser-Thr 1.9e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121208g00006 - - aip:107619407 252.677