Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121208g00005 ATGATGATGAGTTCCTTCTACTTGTTCCTTCTGCTTCCAACTTTCTTCTTCCTCCCCATTAACTGCTTTAACATCATCCAAGCTGCTAGACATCAAAACGCTTTTTATAACTGCACAATCAACGCCACTTTTGCATCCAATAGCACATACCGTTCCAACACCATAACACTCCTAAATTGGCTCTCCTCCAATGGCACTACACATCCCAGAACATACAATACCACAGTAGTTGGGAAAAGCACTGCAGACACAGTTTATGGCCTCTACTATTGTGTAAGAGACATCACACCAGGAATATGCCAAGCCTGTGTGACAGAGGCTTCCAAACTCATATCATCTCTTTGTACCACAGCAAAAGAAGCCATAATTTGGTACGGTATATGCTTCATGCGTTACTCTGACCGTAATTTCTTCTCCAATGTGGAGGAAACTCCAAGTCTCACCTTTGTGAGTGATGTTAACTATGTGGGTCAAGTTGGCCGCTACAACACTCTCCTCTGGAATATGCTGAATGATATGAGAACTATAGCCGCTAGTGATTCAAATAAATTGTCTGCAATGACGCAGAAGATCACAGATAAGCAAAACCTCTATGGTTCCGCTTGGTGTCTCCCATATCTTTCCACTGAGAACTGCAGCTGGTGTCTCAGTGACGCCATTGCATATATTCCAGCAGGTTGCTGCAAGGGAAAATCTGGAGGATATGTATTGTATCCTAGTTGTGGTATTAGATACGAATTATATCCATTCCTTAAGGAACATATAATAGGTCCTCTGAGGCCACCGTCACCATCACCACCGCACGGAGATTCTAGTCCTTTGACTCCACCAGGTAAGCGAAAACAGAGCAACTTACCATTAAGTAAAGTAGCTGTTCCAATTGCCATTATCGTTACACTTGTGCTTTTAACTTTGGGTGGTTGCTGCTTTCTACGAAGAAAACGGAGAAAGAATCAAGATGATATTCTCAAAGAAAACTTTGGGAATGATATAAGCACTTTCGAGTCCTTGCGATTTGAATTATCCCTGATTGAAGCTGCAACAAATAGATTTGCGACAGACAACAGGGTAGGAAAAGGCGGATTTGGAGAAGTCTATAAGGGTACTCTTTCAGATGGACAAGAAATTGCTGTGAAGAGACTTACTAGAAGCTCTGGACAAGGTGCTATAGAGTTTAAAAATGAGGTTCTTGTTATAGCCAAGCTTCAACACAGAAATCTAGTGAGGTTACTGGGATTTTGTTTGGAAGATGAAGAAAAGATACTCATATATGAGTATGTTCCAAACAAAAGCCTTGACTACTTTCTATGCGATCCCCAAAAGCGAAGGGAATTATCTTGGTTTCAACGTAAACAAATCATCACAGGAATCGCCAGAGGCATTCTATACCTACACGAAGATTCTCGCCTTAAAATAATACATCGTGATCTAAAACCTAGTAACGTTTTGTTAGATAGTAATATGAATCCAAAAATATCTGATTTTGGCATGGCTAGAATTGTTGCTGTGGATCAAAATGAAGAAAGCACACATAGAATAGTCGGGACATATGGTTATATGTCTCCAGAATATGCAATGTTTGGACAATTCTCTGTCAAATCGGATGTGTTTAGTTTCGGAGTCATGGTTCTAGAGATTATTAATGGAAAGCAGAAAGGCAGCAACTCTTCTGAATCAGAGTGTATTGATGACATTCGGAGACATGCTTGGGAAAAATGGACAGAAAAAACGCCACTTGAACTACTAGATCCTAATATGGAAGGCCCTTATTCCAAAGAAGAAGTCATCAAATGCATCCACATTGGTTTGTTATGTGTTCAAGAAGAACCAAATGACAGACCAACTATGGCAACAATTGTTTTCTACCTAAATAGCCCTTCACTCAACTTGCCATTCCCTCGTGAACCAGCATATTATTTCAAGCACAATAGAACAGTGGACAGCATCACAACCAGCAAGGGGTTGGTTAATAACAGTGATTCCATCAATGGAATCACCATAACTAAATTTTTTCCTCGTTGA 2022 0.4031 MMMSSFYLFLLLPTFFFLPINCFNIIQAARHQNAFYNCTINATFASNSTYRSNTITLLNWLSSNGTTHPRTYNTTVVGKSTADTVYGLYYCVRDITPGICQACVTEASKLISSLCTTAKEAIIWYGICFMRYSDRNFFSNVEETPSLTFVSDVNYVGQVGRYNTLLWNMLNDMRTIAASDSNKLSAMTQKITDKQNLYGSAWCLPYLSTENCSWCLSDAIAYIPAGCCKGKSGGYVLYPSCGIRYELYPFLKEHIIGPLRPPSPSPPHGDSSPLTPPGKRKQSNLPLSKVAVPIAIIVTLVLLTLGGCCFLRRKRRKNQDDILKENFGNDISTFESLRFELSLIEAATNRFATDNRVGKGGFGEVYKGTLSDGQEIAVKRLTRSSGQGAIEFKNEVLVIAKLQHRNLVRLLGFCLEDEEKILIYEYVPNKSLDYFLCDPQKRRELSWFQRKQIITGIARGILYLHEDSRLKIIHRDLKPSNVLLDSNMNPKISDFGMARIVAVDQNEESTHRIVGTYGYMSPEYAMFGQFSVKSDVFSFGVMVLEIINGKQKGSNSSESECIDDIRRHAWEKWTEKTPLELLDPNMEGPYSKEEVIKCIHIGLLCVQEEPNDRPTMATIVFYLNSPSLNLPFPREPAYYFKHNRTVDSITTSKGLVNNSDSINGITITKFFPR 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121208g00005 673 Pfam Protein kinase domain 353 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121208g00005 673 ProSitePatterns Protein kinases ATP-binding region signature. 357 379 IPR017441 GO:0005524
Stsc121208g00005 673 MobiDBLite consensus disorder prediction 259 282 - -
Stsc121208g00005 673 SMART serkin_6 351 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121208g00005 673 SUPERFAMILY Protein kinase-like (PK-like) 336 649 IPR011009 -
Stsc121208g00005 673 ProSiteProfiles Gnk2-homologous domain profile. 143 250 IPR002902 -
Stsc121208g00005 673 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 312 426 - -
Stsc121208g00005 673 Gene3D Transferase(Phosphotransferase) domain 1 427 629 - -
Stsc121208g00005 673 Pfam Salt stress response/antifungal 38 134 IPR002902 -
Stsc121208g00005 673 Pfam Salt stress response/antifungal 157 248 IPR002902 -
Stsc121208g00005 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672|GO:0006468
Stsc121208g00005 673 MobiDBLite consensus disorder prediction 259 273 - -
Stsc121208g00005 673 FunFam cysteine-rich receptor-like protein kinase 10 427 630 - -
Stsc121208g00005 673 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 36 668 - -
Stsc121208g00005 673 ProSiteProfiles Protein kinase domain profile. 351 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121208g00005 673 Gene3D - 31 137 IPR038408 -
Stsc121208g00005 673 Gene3D - 147 250 IPR038408 -
Stsc121208g00005 673 CDD STKc_IRAK 357 624 - -
Stsc121208g00005 673 Gene3D Phosphorylase Kinase; domain 1 312 426 - -
Stsc121208g00005 673 ProSiteProfiles Gnk2-homologous domain profile. 32 137 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121208g00005 Stsc-Chr121208 28435 31555 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121208g00005 5 673 Receptor kinase-like Gene Family AT4G05200 44.088 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121208g00005 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121208g00005 - - adu:107467162 1138.64