Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121208g00004 ATGGCTTCTTCCTTCAACCAAAAATTCTTCCTCCTTGTTAGCATCCTCAACTTTTCAATCACTACAAAAGCACAGGACACTCATTTTCTCTACCAGGTTTGCTCAAAATACAAATTCACTGCCAACAACACCAACTACCAAAATGACCTCACTACCCTCCTCTCTTCCTTATCCTCCAAGGCCACCAACAACACCGTCACTGGAAAAACCCCCTCCGACACAGTCTATGGCCTATACATGTGCAGAGGAGACATGCCCTCTGAGCTATACAGCGAGTGCGTGGGAAACGCAACTCAAAGACTTTCCAATAACACAGAGTGTTCACACTCCGTAGCGGCAGTTATGTGGTACGACGAGTGCATGGTAAGGTACTCCAACACATCGTTCTTCTCGCGCGTGACAGTGGCGCCTGGGTACCCTGGATACGTGTTGGCCAGCCCTACCAACATGACGGACCAACAAAGCTTCAACCGTTTATTGTATCAAACCTTGAATCAAACTGCGGACGATGCGGCCAATGCGCCCATCGGTGAAAAGAAGTTCGCTACAAAGGAAGCTGCCATATCCATATTCCAGAATCTTTATTGTCTTGCTCAGTGCACGCCGGATCTTTCTCCGGAAGATTGTAGAAGCTGTTTGGATGGTTTGATCAATTCGGACCTTCCTGATTGCTGTGCTGGAAAGCAAGGAGGGAGGATTCTGTACCCTAATTGCAATATTAGGTTTGAGATTTACCCTTTCTACCGAACACTTGAATCTGCTGCACCGGCGCCAGCACTGCATTCAAATTTCGGAGTTGGTCGTGAAAGTGCCACTTTAGAAGGGCTGCAATTTGATTTTACGATAATTGAAGCCGCCACAAACAACTTTTCTCACGAAAACATGATTGGCAAAGGAGGATTCGGAGAAGTTTACAAGGGTATTCTTCCTGATGGGCGACAGGCAGCTATAAAAAAACTTTCTACTAGTTCTATACAAGGTGTAGCTGAATTCAAGAATGAAATTTTGTTGATAGCGAAGCTTCAACATAGGAATCTAGTATCTTTCATGGGCTTTTGTTTAGAAGAAGAAGAGAAAATACTACTTTACGAATATGTGCCAAATGGAAGTCTGGATTACTTTTTATTTGATACTCATCAACACCAAAAGTTAAGTTGGGATCAATGTTATAGAATTATTGGAGGAACTGCACTTGGAATTCTTTATTTACATGAATATTCTAGACTTAAAGTTATACATCGTGGTCTAAAGCCTAGTAATATTTTACTGGATGAAAATATGAATCCAAAAATTTCAGACTTTGGCATGGCTAGAATAGTTGACATTGATCAAGATAGAGGACAAACAAATAGAATTGTTGGTACATAG 1368 0.4218 MASSFNQKFFLLVSILNFSITTKAQDTHFLYQVCSKYKFTANNTNYQNDLTTLLSSLSSKATNNTVTGKTPSDTVYGLYMCRGDMPSELYSECVGNATQRLSNNTECSHSVAAVMWYDECMVRYSNTSFFSRVTVAPGYPGYVLASPTNMTDQQSFNRLLYQTLNQTADDAANAPIGEKKFATKEAAISIFQNLYCLAQCTPDLSPEDCRSCLDGLINSDLPDCCAGKQGGRILYPNCNIRFEIYPFYRTLESAAPAPALHSNFGVGRESATLEGLQFDFTIIEAATNNFSHENMIGKGGFGEVYKGILPDGRQAAIKKLSTSSIQGVAEFKNEILLIAKLQHRNLVSFMGFCLEEEEKILLYEYVPNGSLDYFLFDTHQHQKLSWDQCYRIIGGTALGILYLHEYSRLKVIHRGLKPSNILLDENMNPKISDFGMARIVDIDQDRGQTNRIVGT 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121208g00004 455 SUPERFAMILY Protein kinase-like (PK-like) 276 455 IPR011009 -
Stsc121208g00004 455 Gene3D - 25 129 IPR038408 -
Stsc121208g00004 455 Gene3D - 142 247 IPR038408 -
Stsc121208g00004 455 ProSitePatterns Protein kinases ATP-binding region signature. 296 319 IPR017441 GO:0005524
Stsc121208g00004 455 ProSiteProfiles Gnk2-homologous domain profile. 138 247 IPR002902 -
Stsc121208g00004 455 Pfam Protein kinase domain 292 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121208g00004 455 Gene3D Phosphorylase Kinase; domain 1 261 365 - -
Stsc121208g00004 455 ProSiteProfiles Gnk2-homologous domain profile. 27 129 IPR002902 -
Stsc121208g00004 455 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 47 455 - -
Stsc121208g00004 455 Pfam Salt stress response/antifungal 148 244 IPR002902 -
Stsc121208g00004 455 Pfam Salt stress response/antifungal 34 126 IPR002902 -
Stsc121208g00004 455 FunFam Cysteine-rich receptor-like protein kinase 25 140 247 - -
Stsc121208g00004 455 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 254 365 - -
Stsc121208g00004 455 Gene3D Transferase(Phosphotransferase) domain 1 366 455 - -
Stsc121208g00004 455 FunFam Os07g0541700 protein 366 455 - -
Stsc121208g00004 455 ProSiteProfiles Protein kinase domain profile. 290 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121208g00004 Stsc-Chr121208 22931 26490 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121208g00004 1 455 Receptor kinase-like Gene Family AT4G05200 42.639 3.57e-130 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc121208g00004 Pkinase 1.3e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121208g00004 - - vun:114191422 579.326