Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121201g00002 ATGGCTGATGCTTCCTTTGAGAGTGAGACGGAGTACTATACCCCAAACCATCAGAAACGATACTATCCAACGCCAATGAGTCATCACAACGTATTTGGCTTGGAGTCTTTCACAATGTCCAGCTCTCAAACTCAAAGCAAAGCCACCAGCTCTAGAAGAACTCGCCCCAACAGAATTCCGGCGACGCCTTTCGCTTCGGACGATGATCATTCGTGGCAAGGAGAGGTTTCTTGGAAGTTCGAGGCCAGGGGATGGCATGAGTACAGCGCAAGCATGGGTTCTGTTCTGAATCCATGGCCAGCCGACTCCCCATTCGAACACAGCCGCGTGTTTCGTCGGTCGGCCAATGACTACTTCCTATCACAAACTAGTCGATTCAAAGGCCAATCAGGCTCAACTTATCATAATGAGCATTCTGACTACGGAAGAGTTGAGCTACAGAGCTATATCGCCCGTGACAGTGACCATAGCGAGTCTCGTGGTTTCTCTAAGACCAAGGTCATAAAAGAAAGGGAAAACATAAGAGTCAAGACTAGTCCATTGGCAGAAGAAGACGAGCTCAGTTGGATAGACTATAGCATCTCAGATAAAGAAATTGGTGGACATCACGCTCACTTCTCATATACCAATAAACATGACCACCGTGGCAATTATCGTGACGGCTACGGAATACCATCACGTGGCGATAGATTCGGTACCCCGAGTTATGGTGTTGACAATGACAAGGTTCCAGGGTATGAATATGATGAAGAAGGTGAGGAGGAACTGGACGAGGAAGATGCAGGGCCTCCAAAGACAATTGCATTGTTTGGGTTATTTAGATATGCAACAAAGTGGGATTGGGTTCTTGTGCTTGTAGGTTGTTTAGGGGCTTTCATAGATGGAGGCTCACTTCCTTTTTATTCTTATCTTTTTGGAGAATTGGTCAATAAGATTTCACAAAATGGGAATAATAAGCAAATGATGAAGGATGTAGAGAAGATATGCATATATATGACCGGGTTGGCTGCAGTTGTTTTGGTTGGAGCATATTTGCAGATCGCGTGTTGGAGGTTAGTGGGCGAGAGATCTGCTCAAAGAATGAGGACACAGTATTTAAGAGCAGTTCTTCGACAGGACATTAGCTTTTTTGACACAGAGATCAACACTGGTGACATCATGCATGGAATTGCAAGTGATGTTGCCCAAATCCAAGAGGTTATGGGAGAAAAGTTGGATTTAGAAGGTCATGGAGAGTCTCTTTGGTGGTATTCTCGTGCCACCAAAACTCCCAAAAACAAGCTTGCACATACACCTCAACACTATGTCATCAGCCCCTGCTTGATTTGTCTTATTGCCACCATTATTGAAGCACTCCTCGAGCTTGAATCCATAATGCCTAAGTCCTTTTCTCCTAATAATAAGCTCACCCTCCAGAATCCATGTCCTCTTCAACCTCAATTCATTCTAAACCTAAAACCTCCACATCCTCCGCTGAAGAAAGCTGGTGCTATAGCAGAGCAAACGATCAGTTCTATTAGGACAGTGTTTTCTTTTGTTGCGGAAAGCCAATTGGCTGCAAAATATGCTCAACTACTACAAAAATCTTCCCCAATAGGCGCAAAAATTGGTTTTGCTAAGGGTGCAGGCATGGGCATTATCTATTTAGTAACTTATTCAACATGGGCCTTGGCATTTTGGTATGGCTCTATCTTAATTGCCAAGGACAAACTTGATGGGGGTGCAGCTATTGCTTGTTTCTTTGGTGTCAATGTTGGAGGAAGAGGTCTCGCATTGGCGCTGTCATATTTTGCACAGTTTGCACAGGGTACTGTTGCAGCAAGTCGTGTATTTTCTGTTATAGACAGAATTCCTAAGATTGATCCATATAGCCCTGACGGAAGGAAGCTTACTGTTGTTCGTGGTAGAATTGAGTTAAAAAATGTTAGTTTTGCATACCCATCTCGCCCTGATTCTCTGATACTTCATTCCCTTAATTTAGTCTTTTCATCGGCAAAAACTTTGGCACTGGTTGGTGCTAGTGGAGGGGGCAAGTCAACTATATTTGCTCTCATTGAGAGGTTCTATGACCCGATTGAAGGGACGATAACCTTGGATGGCCATGATTTGAGGACGTTGCAAGTCAAGTGGCTAAGAGGTCAAATTGGGATGGTTGGTCAAGAGCCAATTCTATTTGCCACGTCCATATTGGAAAACGTGATGATGGGGAAAGATAATGTCACTAAGGAGGAGGCAATTGCTGCGTGCATTGCTGCAGATGCTCACAATTTCATATCTAACTTACCACTTGGCTATGACACTCAGGTCGGAGATAGGGGTACAAAACTATCGGGTGGTCAAAAGCAGAGAATCGCACTGGCTCGAGCAATAATCAAAGATCCTAAAATTCTTCTTTTAGATGAACCTACCAGCGCTCTTGATGCTGAGTCAGAGGCTGCAGTCCAACGCGCCATCGACAAGATTTCTGCAGGTCGAACAACCATTGTGATTGCTCACAGGATAGCTACTGTGAAGAATGCTCATGCCATCGTGGTCCTTGAAAATGGTACTGCCATTGAGATAGGTGACCATCGCCAGCTTATGGGAAAAGGTGGAACCTACTATAGCCTTGTCAAACTCGCTACTGAGGCCATATCAAAGCCTGTCTCTAATGAAAATGACATGCAAAAATCCAATGATCTTGCTATTCATGACAAATCAGTTGCTGATGTATCAAGATATGTAGCAGATATCTCAAGGCCTAAACAGACAAAATACTTTCAGGAGGAAAAAGGTGTAGAGATGGAAGATGAGCCAAACCAAAGGCCAAAAAAATTTAGACTTTCTGACATATTGAAATTGCAAAAGCCTGAGCTTTGGATGCTACTTTTAGGATTCTTTCTGGGTATGTTTGCAGGCGCTTTTCTATCTCTTTTTCCTTTGGTTTTAGGCATATCTCTTGGAGTATATTTTGACGATGATACTGATAAGATGAAGAGAGATGTTGGACACCTTTGTTTAGTACTTGTGTGTCTTGGATTCGGTTGTATTCTTTCCATGACAGGACAACAAGGCTTTTGTGGTTGGGCAGGATCAAAGCTAACATTAAGGGTTAGAAACCTCTTGTTCCAGTCCATCTTGAAACAAGAACCTGGATGGTTTGACTTGGATAAAAACTCGACTGGAGTGTTAGTATCAAGGCTCTCCATAGATTGTGTCAGCTTTCGTTCAATACTTGGTGATCGATTATCAGTCCTTCTTATGGGGTTGAGTTCGGCAGCCGTCGGTCTTAGTGTTTCCTTTGTCATCAATTGGAAACTAACCCTTTTGGCAGCAGCTGTTACTCCCTTTACTCTTGGTGCAAGCTATGTAAGCTTGCTTATAAATATTGGGCCACAAGTTGATAACAACGCATATGCCAAAGCTAGCAATATTGCTTCTGGTGCAGTGTCAAACATAAGAACGGTTACTACGTTTTCTGCCCAGGAACAATTAATAAAGTCCTTTGATCAAGCCTTATCAGAACCTCGAAGGAAATCATTGAGAAGTTCGCAGATTCAAGGTCTGACATTTGGATTCTTTCAAGGTGCCATGTATGGAGCGTACACCCTGGTTCTTTGGTTTGGTGCCAGACTTGTAGATCGTGACGAAGCCAAGTTCGGACATGTTTTTAAGATTTTTCTCATTCTTGTTTTGAGCTCATTTTCCGTGGGACAACTAGCTGGTTTAGCACCAGATACTTCTATGGCAGCCACAGCAATCCCCTCTGTTCAAGATATCATAAACCGGAGGCCACTTATAGGCAACGATAAGTCAAAAAGAAGCAAGAAAGTAGTGGATCGATCAAAGTCGTCTTTCAAAATAGAATTCAAAATGGTCACATTTGCATACCCATCTAGGCCTACTGTGATAGTGCTAAGGGATTTCTCTTTGAAGGTCAAAGGTGGAAGCACCGTGGCCTTGGTTGGACCGAGTGGATCAGGAAAATCAACAATCATATGGTTAATACAGAGGTTTTATGATCCAAATAAAGGACAAGTGATGCTAGGTGGTGTAGACCTTAAGGAAATTGATGTTAAGTGGTTAAGGAGACAAATGGCTTTAGTAGGTCAAGAACCAGCACTGTTTTCTGGGAGTATAAGGGAGAACATTACTTTTGGGGACCCAAATGCTTCATGGGCTGAAATTGAAGCAGCAGCAAAAGAAGCTTACATTCACAAATTCATTAGTGGGCTTCCTCAAGGTTACGAGACCCAGGTTGGTCAGAGCGGGGTTCAACTATCAGGTGGCCAAAAACAAAGAATTGCAATAGCAAGGGCCATACTGAAGAAATCAAGGGTTCTTCTACTTGATGAAGCAAGCAGTGCTTTGGACTTGGAGTCTGAGAAACACATACAACATGCCCTAAAAAAAGTTTCCAAAGAAGCAACAACCATAATTGTAGCCCATCGTCTATCGACAATTAAAGAAGCTGACAAGATAGTGGTTATGAAAGATGGGGCAGTGGCAGAGTATGGAAGTCATGATACACTCATGAATTCCCATCGAAATGGTTTGTATGCTAGCCTAGTTAGTTCTGAGACCGAAGCCAATGCCTTTGCTTGA 4584 0.4313 MADASFESETEYYTPNHQKRYYPTPMSHHNVFGLESFTMSSSQTQSKATSSRRTRPNRIPATPFASDDDHSWQGEVSWKFEARGWHEYSASMGSVLNPWPADSPFEHSRVFRRSANDYFLSQTSRFKGQSGSTYHNEHSDYGRVELQSYIARDSDHSESRGFSKTKVIKERENIRVKTSPLAEEDELSWIDYSISDKEIGGHHAHFSYTNKHDHRGNYRDGYGIPSRGDRFGTPSYGVDNDKVPGYEYDEEGEEELDEEDAGPPKTIALFGLFRYATKWDWVLVLVGCLGAFIDGGSLPFYSYLFGELVNKISQNGNNKQMMKDVEKICIYMTGLAAVVLVGAYLQIACWRLVGERSAQRMRTQYLRAVLRQDISFFDTEINTGDIMHGIASDVAQIQEVMGEKLDLEGHGESLWWYSRATKTPKNKLAHTPQHYVISPCLICLIATIIEALLELESIMPKSFSPNNKLTLQNPCPLQPQFILNLKPPHPPLKKAGAIAEQTISSIRTVFSFVAESQLAAKYAQLLQKSSPIGAKIGFAKGAGMGIIYLVTYSTWALAFWYGSILIAKDKLDGGAAIACFFGVNVGGRGLALALSYFAQFAQGTVAASRVFSVIDRIPKIDPYSPDGRKLTVVRGRIELKNVSFAYPSRPDSLILHSLNLVFSSAKTLALVGASGGGKSTIFALIERFYDPIEGTITLDGHDLRTLQVKWLRGQIGMVGQEPILFATSILENVMMGKDNVTKEEAIAACIAADAHNFISNLPLGYDTQVGDRGTKLSGGQKQRIALARAIIKDPKILLLDEPTSALDAESEAAVQRAIDKISAGRTTIVIAHRIATVKNAHAIVVLENGTAIEIGDHRQLMGKGGTYYSLVKLATEAISKPVSNENDMQKSNDLAIHDKSVADVSRYVADISRPKQTKYFQEEKGVEMEDEPNQRPKKFRLSDILKLQKPELWMLLLGFFLGMFAGAFLSLFPLVLGISLGVYFDDDTDKMKRDVGHLCLVLVCLGFGCILSMTGQQGFCGWAGSKLTLRVRNLLFQSILKQEPGWFDLDKNSTGVLVSRLSIDCVSFRSILGDRLSVLLMGLSSAAVGLSVSFVINWKLTLLAAAVTPFTLGASYVSLLINIGPQVDNNAYAKASNIASGAVSNIRTVTTFSAQEQLIKSFDQALSEPRRKSLRSSQIQGLTFGFFQGAMYGAYTLVLWFGARLVDRDEAKFGHVFKIFLILVLSSFSVGQLAGLAPDTSMAATAIPSVQDIINRRPLIGNDKSKRSKKVVDRSKSSFKIEFKMVTFAYPSRPTVIVLRDFSLKVKGGSTVALVGPSGSGKSTIIWLIQRFYDPNKGQVMLGGVDLKEIDVKWLRRQMALVGQEPALFSGSIRENITFGDPNASWAEIEAAAKEAYIHKFISGLPQGYETQVGQSGVQLSGGQKQRIAIARAILKKSRVLLLDEASSALDLESEKHIQHALKKVSKEATTIIVAHRLSTIKEADKIVVMKDGAVAEYGSHDTLMNSHRNGLYASLVSSETEANAFA 1527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121201g00002 1527 SMART AAA_5 1308 1494 IPR003593 GO:0016887
Stsc121201g00002 1527 SMART AAA_5 664 865 IPR003593 GO:0016887
Stsc121201g00002 1527 MobiDBLite consensus disorder prediction 38 57 - -
Stsc121201g00002 1527 FunFam ABC transporter B family member 1 1271 1521 - -
Stsc121201g00002 1527 ProSitePatterns ABC transporters family signature. 1420 1434 IPR017871 GO:0005524|GO:0016887
Stsc121201g00002 1527 FunFam Multidrug resistance protein 1, 2, 3 635 889 - -
Stsc121201g00002 1527 CDD ABC_MTABC3_MDL1_MDL2 1281 1517 - -
Stsc121201g00002 1527 CDD ABC_6TM_Pgp_ABCB1_D2_like 945 1260 - -
Stsc121201g00002 1527 FunFam ATP-binding cassette transporter, subfamily B, member 2, group MDR/PGP protein PpABCB2 1129 1269 - -
Stsc121201g00002 1527 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 956 1242 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc121201g00002 1527 SUPERFAMILY ABC transporter transmembrane region 494 622 IPR036640 GO:0005524|GO:0016020
Stsc121201g00002 1527 MobiDBLite consensus disorder prediction 38 70 - -
Stsc121201g00002 1527 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 285 602 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc121201g00002 1527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1276 1518 IPR027417 -
Stsc121201g00002 1527 CDD ABC_MTABC3_MDL1_MDL2 637 874 - -
Stsc121201g00002 1527 Pfam ABC transporter 655 804 IPR003439 GO:0005524
Stsc121201g00002 1527 ProSitePatterns ABC transporters family signature. 776 790 IPR017871 GO:0005524|GO:0016887
Stsc121201g00002 1527 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 637 873 IPR003439 GO:0005524
Stsc121201g00002 1527 SUPERFAMILY ABC transporter transmembrane region 272 403 IPR036640 GO:0005524|GO:0016020
Stsc121201g00002 1527 CDD ABC_6TM_Pgp_ABCB1_D1_like 285 610 - -
Stsc121201g00002 1527 Pfam ABC transporter transmembrane region 285 405 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc121201g00002 1527 Pfam ABC transporter transmembrane region 493 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc121201g00002 1527 Pfam ABC transporter transmembrane region 955 1226 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc121201g00002 1527 Gene3D ABC transporter type 1, transmembrane domain 493 1246 IPR036640 GO:0005524|GO:0016020
Stsc121201g00002 1527 Gene3D ABC transporter type 1, transmembrane domain 264 411 IPR036640 GO:0005524|GO:0016020
Stsc121201g00002 1527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 872 IPR027417 -
Stsc121201g00002 1527 Pfam ABC transporter 1299 1447 IPR003439 GO:0005524
Stsc121201g00002 1527 SUPERFAMILY ABC transporter transmembrane region 936 1258 IPR036640 GO:0005524|GO:0016020
Stsc121201g00002 1527 Gene3D - 635 893 IPR027417 -
Stsc121201g00002 1527 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1281 1517 IPR003439 GO:0005524
Stsc121201g00002 1527 Gene3D - 1272 1526 IPR027417 -
Stsc121201g00002 1527 PANTHER ABC TRANSPORTER B FAMILY 250 873 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121201g00002 Stsc-Chr121201 5857 13987 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121201g00002 986 1527 Calmodulin-binding Proteins AT2G36910 36.949 5.07e-102 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121201g00002 K05658 - gmx:100816700 2041.54