Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121200g00003 ATGGAACTTGGATTAAGCTTAGGAGACTCTTCAAGGCCTTTTGTTGGGTTCATGGAAAAGCCTCGTAGTAGTGAACCTTCTTCTACCAACCAACTTGGATTAGGCTTCACCACCACCTCCACCACCTTGTCCATTGGACCAATCATCACTACAAGACAAAGAAATCAACAACAACAACAAGAAAATGAAGAAAAAGTAGAAGCAAAACCAAAGGACATCATAAACAACAACAAGAGCAACAACAACCCTCCTCTTCATCAGCTTGATCTGCTTCCTCAACTCTCTCTCCCATGGCATCCTTCTCAAAACGGCAGAGTCGCAGGAGGTTTCGGGGTTTCTTCAAAAGGTTTGGACGTAAACGTGCTGCCGCTGACAACCGTGGCGGCGGCGGGGGCAGAGGACGAGACGGAGGAAGGGGCGGCGCTATCATCATCCCCGAACAGCGCAGCATCATCCTTTCAGACGGATCTATGCATATTTGGTGGCGGCGGTGGTAGTCACAGTGGTGGTTCAGGTGTAAACTATTACAACCACAGTGGAAAAAGAGATCACTCCGATGGCGAAGCTTATGATCATCATCACCGGAGGGATTCTTCAAGAGCAAGTGATGAAGATGAAAATTGCGGCGGCGATGGGGACGGCGACGGCTGCACAAGGAAGAAGCTCAGACTCTCCAAGGAACAATCGGCTTTCCTTGAAGAGAGCTTCAAAGAGCACAACACTCTCAACCCTAAACAAAAGCTTGCTCTTGCTAAACAACTCAATCTTCGGCCTCGCCAAGTTGAAGTCTGGTTTCAAAATAGAAGAGCAAGGACAAAGTTGAAGCAAACTGAGGTGGATTGTGAGTACTTGAAGAGGTGCTGTGAAACACTAACAGAAGAGAACAGAAGGCTTCACAAGGAGCTTCAAGAATTGAGGGCCCTAAAGACTTCAAACCCATCCTACATGCAGTTACCAGCAACAACCTTGACCATGTGCCCTTCTTGTGAACGTGTTGCTACAAATCCTTCAAACAATTCTGCCTCACCAACTCCTAATAATAATTCTAACAATAATTTTAATGGTAATAATAATAGTTGTGACTCAAATTCCAAGGCCATTGGATTCCCTCTTGGGAAACACAGGAATCCTTTTAATCACACCACACATCAGGAACAACAAAAACATCATCCACATTAG 1179 0.4572 MELGLSLGDSSRPFVGFMEKPRSSEPSSTNQLGLGFTTTSTTLSIGPIITTRQRNQQQQQENEEKVEAKPKDIINNNKSNNNPPLHQLDLLPQLSLPWHPSQNGRVAGGFGVSSKGLDVNVLPLTTVAAAGAEDETEEGAALSSSPNSAASSFQTDLCIFGGGGGSHSGGSGVNYYNHSGKRDHSDGEAYDHHHRRDSSRASDEDENCGGDGDGDGCTRKKLRLSKEQSAFLEESFKEHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPSYMQLPATTLTMCPSCERVATNPSNNSASPTPNNNSNNNFNGNNNSCDSNSKAIGFPLGKHRNPFNHTTHQEQQKHHPH 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121200g00003 392 FunFam Homeobox-leucine zipper protein 18 203 280 - -
Stsc121200g00003 392 CDD homeodomain 219 276 IPR001356 GO:0003677
Stsc121200g00003 392 Pfam Homeodomain 219 273 IPR001356 GO:0003677
Stsc121200g00003 392 SUPERFAMILY Homeodomain-like 210 276 IPR009057 -
Stsc121200g00003 392 SMART HOX_1 217 279 IPR001356 GO:0003677
Stsc121200g00003 392 SMART halz 275 318 IPR003106 GO:0006355|GO:0043565
Stsc121200g00003 392 MobiDBLite consensus disorder prediction 172 219 - -
Stsc121200g00003 392 Pfam Homeobox associated leucine zipper 275 309 IPR003106 GO:0006355|GO:0043565
Stsc121200g00003 392 Coils Coil 288 311 - -
Stsc121200g00003 392 ProSitePatterns 'Homeobox' domain signature. 250 273 IPR017970 GO:0000981|GO:0006355
Stsc121200g00003 392 MobiDBLite consensus disorder prediction 58 72 - -
Stsc121200g00003 392 MobiDBLite consensus disorder prediction 1 88 - -
Stsc121200g00003 392 ProSiteProfiles 'Homeobox' domain profile. 215 275 IPR001356 GO:0003677
Stsc121200g00003 392 MobiDBLite consensus disorder prediction 73 88 - -
Stsc121200g00003 392 Gene3D - 223 273 - -
Stsc121200g00003 392 MobiDBLite consensus disorder prediction 179 219 - -
Stsc121200g00003 392 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 59 350 - -
Stsc121200g00003 392 CDD bZIP 268 307 - -
Stsc121200g00003 392 MobiDBLite consensus disorder prediction 378 392 - -
Stsc121200g00003 392 MobiDBLite consensus disorder prediction 334 392 - -
Stsc121200g00003 392 MobiDBLite consensus disorder prediction 22 57 - -
Stsc121200g00003 392 MobiDBLite consensus disorder prediction 334 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121200g00003 Stsc-Chr121200 27254 30104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121200g00003 115 331 Homeobox Transcription Factor Family AT3G60390 56.881 4.07e-66 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc121200g00003 Homeodomain 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121200g00003 K09338 - gmx:100778742 381.719