Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121198g00011 ATGAACACAGAAATGTCACAAAGTGAAGATGGAGAGATCAACATGGCAGCTTGGATTCTTGGTGTTAAAAATCTATCAATTCAACCATATCCACTTCCCTCTTTAGGTCCCCATGATGTCAAAATTAAGATTAAAGCTGTTGGTATTTGTGGAAGTGATGTTCATTACTATAAGACTATGAGATGTGCAAATTTTATTGCAAACAAGCCTATGGTTCTGGGGCATGAGTGTGCTGGAATCATACAAGAACTTGGCACTCAAGTTCAATCTCTTTCAGTAGGAGATAGGGTAGCCTTAGAGCCTGGAATCAGTTGCCAAACATGCAATTTCTGCAAAGGCGGCCGCTACAACCTCTGTCGCGGCATGAAATTTTTCGGATCAGCATCAACTCACGGTTCTCTTGCCAATATGGTGGTGCATCCTGCAAATCTGTGCTTCAAGCTACCTGACAATGTGAGCTTGGAGGAAGGAGCCATGATTGAGCCACTCAGTGTTGGAGTGCATGCGTGTCGCCGTGCGAATATCGGTCCGGACACAAATGTACTGATCATAGGAGCAGGACCAATTGGCCTTATAGTATCACTTGCTGCCAGGGCATTTGGATCACCAAGAATTGTCATGGTTGATGTTGATAACACTCGTTTATCAATTGCAAAAGATCTTGGTGCAGATGAAACTATCCTAGTTTCAACTAGTATCCAGGAGATGGAGAAAGAAGTGGTGCAAATTCAGATTGCCATGGGGTGTAAGATTGATGTGAGTTTTGATTGTGTTGGATACAATAAAACCATGTCCACAGCACTCAATGCCACCACCTCTGGAGGCAAAGTTTGCCTTATTGGATTAGCTCAAACTGAGATGACACTTCCCCTTACTCCAGCCGCCGCGAGGGAGGTTGATGTAATTGGGATATTCAGATACAGAAATACTTGGCCACTGTGCATTGAGCTATTAAGAACTGGGAAGATTGACATCAAAGCATTGATAAGTCACAGGTTTGGATTCTCACAGAAAGAGTTGGAAGAAGCCTTTGAAACCAGTGCTCAAGGGGGAACTGCTATTAAGATCATGTTCAATCTCTAG 1083 0.4331 MNTEMSQSEDGEINMAAWILGVKNLSIQPYPLPSLGPHDVKIKIKAVGICGSDVHYYKTMRCANFIANKPMVLGHECAGIIQELGTQVQSLSVGDRVALEPGISCQTCNFCKGGRYNLCRGMKFFGSASTHGSLANMVVHPANLCFKLPDNVSLEEGAMIEPLSVGVHACRRANIGPDTNVLIIGAGPIGLIVSLAARAFGSPRIVMVDVDNTRLSIAKDLGADETILVSTSIQEMEKEVVQIQIAMGCKIDVSFDCVGYNKTMSTALNATTSGGKVCLIGLAQTEMTLPLTPAAAREVDVIGIFRYRNTWPLCIELLRTGKIDIKALISHRFGFSQKELEEAFETSAQGGTAIKIMFNL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121198g00011 360 CDD sorbitol_DH 16 359 IPR045306 GO:0016616
Stsc121198g00011 360 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Stsc121198g00011 360 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 151 324 IPR036291 -
Stsc121198g00011 360 Pfam Zinc-binding dehydrogenase 188 318 IPR013149 -
Stsc121198g00011 360 Gene3D - 23 347 - -
Stsc121198g00011 360 SUPERFAMILY GroES-like 15 186 IPR011032 -
Stsc121198g00011 360 SMART PKS_ER_names_mod 21 358 IPR020843 GO:0016491
Stsc121198g00011 360 PANTHER SORBITOL DEHYDROGENASE 14 360 - -
Stsc121198g00011 360 FunFam Sorbitol dehydrogenase 165 305 - -
Stsc121198g00011 360 Gene3D - 165 305 - -
Stsc121198g00011 360 Pfam Alcohol dehydrogenase GroES-like domain 37 148 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121198g00011 Stsc-Chr121198 37846 40580 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121198g00011 17 293 Monolignol Biosynthesis Gene Families AT4G37980 26.552 1.15e-17 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121198g00011 K00008 K19635 cave:132181067 581.637