Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121198g00009 ATGGGGAAAGGAGGGATGTCAATAGATGGTGATCATGGAGAAGAGCAGAACATGGCTGCTTGGCTTGTTGCCATCAACACACTCAAGATTCAGCCATTCAACCTTCCTCCTCTTGGACCCCATGATGTCAGAGTTAGAATGAAAGCTGTTGGTATATGTGGAAGTGATGTTCATTACCTCAAGACACTGAGATGTGCACACTTTGTAGTTGAAGAGCCAATGGTGATTGGTCATGAGTGTGCTGGGATCATTGAAGAAGTTGGCAGTGAGGTCAAGACCTTGGTGCCCGGTGACCGTGTGGCGATTGAGCCAGGAATCAGTTGCTGGCGTTGCGACCACTGCAAGCAGGGCCGCTATAACTTGTGCCCTGATATGAAGTTCTTTGCCACTCCACCGGTTCATGGCTCCCTTGCTAATCGGATAGTGCATCCAGCAGACCTATGTTTTAAACTACCAGACAATGTAAGCTTAGAGGAGGGGGCAATGTGCGAGCCCTTAAGCGTCGGTGTTCATGCTTGTAGGCGAGCTGAGATTGGCCCAGAAACAAATGTGTTGATCATGGGAGCAGGACCTATTGGGCTTGTTACAATGCTTGCGGCTCGAGCTTTTGGTGCGCCTAGGATTGTCATCGTGGATGTCGATGACCATCGTTTATCTGTGGCAAAGTCTCTTGGTGCCGATGATATTGTCAAAGTCTCAACAAACACTCAGGATGTTCCTGGAGAAGTTGAACAGATACATAAGGCTATGGGAGCTGATGTAGATGTTACATTTGACTGTGCTGGTTTCAACAAAACCATGACTACAGCACTGAGTGCTACAAAGCCAGGTGGCAAAGTTTGCTTAGTGGGAATGGGTCATTCTGAAATGACTGTCCCACTCACCCCAGCTGCTGCAAGGGAAGTTGATGTGATCGGTATATTCCGGTATAAGAACACATGGCCTCTATGTCTTGAGTTTCTAAGGAGCGGCAAAATCGATGTGAAGCCCCTTATAACACACAGGTATGGATTCTCTCAGAAGGAAGTGGAAGAAGCGTTTGAAACAAGTGCTGCTGGTGGTAATGCTATTAAGGTCATGTTCAATCTCTAG 1092 0.4744 MGKGGMSIDGDHGEEQNMAAWLVAINTLKIQPFNLPPLGPHDVRVRMKAVGICGSDVHYLKTLRCAHFVVEEPMVIGHECAGIIEEVGSEVKTLVPGDRVAIEPGISCWRCDHCKQGRYNLCPDMKFFATPPVHGSLANRIVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRAEIGPETNVLIMGAGPIGLVTMLAARAFGAPRIVIVDVDDHRLSVAKSLGADDIVKVSTNTQDVPGEVEQIHKAMGADVDVTFDCAGFNKTMTTALSATKPGGKVCLVGMGHSEMTVPLTPAAAREVDVIGIFRYKNTWPLCLEFLRSGKIDVKPLITHRYGFSQKEVEEAFETSAAGGNAIKVMFNL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121198g00009 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 154 327 IPR036291 -
Stsc121198g00009 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 77 91 IPR002328 GO:0008270|GO:0016491
Stsc121198g00009 363 SMART PKS_ER_names_mod 23 361 IPR020843 GO:0016491
Stsc121198g00009 363 Pfam Zinc-binding dehydrogenase 191 321 IPR013149 -
Stsc121198g00009 363 Pfam Alcohol dehydrogenase GroES-like domain 40 151 IPR013154 -
Stsc121198g00009 363 PANTHER SORBITOL DEHYDROGENASE 16 363 - -
Stsc121198g00009 363 FunFam Sorbitol dehydrogenase 168 308 - -
Stsc121198g00009 363 SUPERFAMILY GroES-like 18 189 IPR011032 -
Stsc121198g00009 363 CDD sorbitol_DH 19 362 IPR045306 GO:0016616
Stsc121198g00009 363 Gene3D - 168 308 - -
Stsc121198g00009 363 Gene3D - 27 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121198g00009 Stsc-Chr121198 34649 36926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121198g00009 30 296 Monolignol Biosynthesis Gene Families AT4G37980 28.058 5.12e-19 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121198g00009 K00008 - gmx:100791559 676.011