Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121198g00003 ATGTTTACCTTCACTACTACTCACTCTAACTCCACCAACACATGGCCCTCTGAATTCTCCTCTTCCTATGACACTTCTTCACCACTTTCCGACGCAAGTACCAGTGGTGGAGGGGCTCATGCTTTCGTGCTTTCTGACGAGGACGTCATGCTGGCGGCAACCCACCCCAAGAAGCGTGCGGGGAGGAAGAAGTTCAAGGAGACACGTCACCCTGTGTACAGGGGTGTCAGGAGGAGGAACTCTGATAAGTGGGTTTGTGAAGTTAGGGAGCCAAACAAGAAGTCTAGGATTTGGCTTGGGACATTCCCTACGCCTGAGATGGCCGCGCGTGCTCATGACGTCGCAGCTATAGCCTTGAGAGGCCGCCACGCTTGTCTTAACTTTGCTGATTCTGCATGGCGACTTCAGGTTCCTGCCACGTCAGATGCCAAGGCCATCCAAAAGGCTGCAGCAGAGGCTGCTGAAGCCTTCCGGCCTGAGATGGCCTTGGAGACTAATGACACTACCAAAGAGAGCTTCGATGATGACGTGGCAGTCGCAGCAGCGGCGGTGCTGAAAAAAGAGGAGCAAGGAGTGTTCTGTACGGAGGAGGAAGAAGAGGGATTGCCGGAGTCATTGAGAAACATGGTGCTCATGTCCCCAACACATTGCATGGGGTATGAGCACGGATATGATGATGTGGACATTGGTGATGCTGAGGTGTCACTATGGAGTTTTTCAATTTAA 726 0.5248 MFTFTTTHSNSTNTWPSEFSSSYDTSSPLSDASTSGGGAHAFVLSDEDVMLAATHPKKRAGRKKFKETRHPVYRGVRRRNSDKWVCEVREPNKKSRIWLGTFPTPEMAARAHDVAAIALRGRHACLNFADSAWRLQVPATSDAKAIQKAAAEAAEAFRPEMALETNDTTKESFDDDVAVAAAAVLKKEEQGVFCTEEEEEGLPESLRNMVLMSPTHCMGYEHGYDDVDIGDAEVSLWSFSI 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121198g00003 241 PRINTS Ethylene responsive element binding protein signature 95 111 IPR001471 GO:0003700|GO:0006355
Stsc121198g00003 241 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Stsc121198g00003 241 SUPERFAMILY DNA-binding domain 72 131 IPR016177 GO:0003677
Stsc121198g00003 241 Gene3D AP2/ERF domain 72 130 IPR036955 GO:0003700|GO:0006355
Stsc121198g00003 241 MobiDBLite consensus disorder prediction 1 20 - -
Stsc121198g00003 241 ProSiteProfiles AP2/ERF domain profile. 72 129 IPR001471 GO:0003700|GO:0006355
Stsc121198g00003 241 SMART rav1_2 72 135 IPR001471 GO:0003700|GO:0006355
Stsc121198g00003 241 FunFam Ethylene-responsive transcription factor 2 71 130 - -
Stsc121198g00003 241 Pfam AP2 domain 71 121 IPR001471 GO:0003700|GO:0006355
Stsc121198g00003 241 CDD AP2 73 131 IPR001471 GO:0003700|GO:0006355
Stsc121198g00003 241 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 26 238 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121198g00003 Stsc-Chr121198 5550 7015 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121198g00003 13 239 AP2-EREBP Transcription Factor Family AT5G51990 53.879 2.56e-71 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc121198g00003 AP2 1.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121198g00003 - - gmx:547622 278.485