Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121193g00006 ATGAACGGCGACGGCCGGAGACGCGACCGGAGGGACAATCCCAGGAGATCGAAGAAGCAGAAGCAGATTTCCAGTGCAGAGGAAGAACTTGAGGCGAAATTAGGGTTCGAAGTCTTCTCTGAGGGCGAAAAGCGTCTTGGGTGGCTGCTCAATTTCGCATCTTCCTCTTATGAGGATGAAGAGACCCGCAAAGTTTACAGTTGCGTCGATCTTTACTTTGTTACACAGGATGGATCTTCCTTCAAGGCTAAATACAGATTTCGCCCTTATTTCTATGCAGCTACCAAGAATAAAATGGAGATGGACGTTGAAGCATACCTGAGGCGCTGTTATGAAACTCAGATTGCAGACATTAAAATTATAGAGAAGGAAGACTTGGATCTTAAAAATCATTTGTCTGGCTTAAGAAAATCATATCTAAAGCTATCATTTGACACCGTGCAACAATTGATGACTGTAAAGAGTGACTTGATGCATGTTGTTGAAAGAAATCAGGCAAAGTCTGATGCTGCAGAAGCCTATGAGTTCATATTGACTGAAAGAAGAGAACAAAAACCTCAAGACTTCATAGATTGCATAACTGATCTCCGCGAATATGATGTTCCTTATCATGTTCGCTTTGCTATTGACAATGCTACTATGACACTCAGATTCACATGTGACCCAGATATACGCTCTGGCCAGTGGTATGATGTTTCCGTGTCAAGCACTGGGGTTACACTTGAGAAGAGAACAGATCTTCTGCAGCGTGCTGAAGTTCGTGTTTGTGCATTTGACATTGAGACCACAAAACTTCCTCTCAAATTTCCTGATGCTGACTATGATTTAGTTATGATGATTTCATACATGGTAGATGGACAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGTGATGACATAGAGGATTTAGAGTACACTCCTAAACCAGAGTTTGAAGGCTGTTTTAAGGTTACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTGTGGTTTTCTCACATGCAAGAGGTGAAACCTGGTATTTATGTGACATATAATGGTGATTTTTTTGATTGGCCATTCCTTGAGAAAAGGGCAGAACATCATGGGTTCAAAATGAGCGAGGAATTGGGATTTCAGTGTGACAAGAATCAAGGGGAATGTCGTGCTAAATTTGCATGTCATTTAGATTGTTTTGCTTGGGTTAAACGTGACAGTTATCTCCCTCAAGGAAGCCAAGGCCTAAAGGCTGTTACAAAAGCAAAGTTGGGTTATGATCCCTTGGAGGTGAACCCTGAGGATATGGTTCGCTTTGCAAAGGAAAAACCTCAGACAATGGCTTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTCCATCCCTTTATTTTCTCCCTTGCTACTATTATACCCATGTCACCAGATGAAGTCCTGCGCAAAGGCAGTGGGACCCTCTGTGAAATGTTGCTCATGGTTCAGGCATACAAAGCGAATGTTATATGTCCTAACAAACACCAATCTGAGCCAGAGAAGTTTTATAACAATCATCTTCTTGAGAGTGAGACATACATAGGTGGCCATGTAGAATGCCTAGAAAGTGGTGTTTTCAGATCTGACATTCCAACTAGTTTTACACTGGAGTCATCTGCCTATGAGCAATTGATCAACAATCTTGATAGAGATCTACAGTATGCTATAAGAGTAGAGGGTAAAATGGATTTGGAATCTGTCTCTAATTATGATGAAGTAAAGACTGCCATTATGGAAAAGCTTTCAAAATTACGAGATGCTCCAATACGTGAAGAATGCCCCCTCATTTATCATCTAGATGTAGCTGCTATGTATCCAAACATAATTTTGACAAACCGACTTCAGCCACCGTCAATTGTTTCAGATGAGGTTTGCACTGCATGTGATTTCAACCGTCCTGGAAAGACATGTCTACGCAAACTTGAGTGGGTTTGGCGTGGAGAAACATTCATGGCAAAGAAAAGTGACTATTATCATATAAAGAAGCAGATTGAGTCAGATTTTGTTGATGGTGCTAATGCAAGTTTATCAAAATCTTTTCTTGACCTGCCCAAGGCAGACCAACAATCAAGGCTGAAAGACCGTTTAAGGAAATACTGCCAGAAGGCATACAAGCGTGTTCTTGACAAACCAGTTACAGAACTCCGTGAAGCAGGAATCTGCATGCGTGAAAATCCATTTTATGTTGACACTGTTCGCAGTTTCCGAGATAGAAGATATGAATATAAAGGCCTTAATAAGGTTTGGAAGGGAAAACTGTCAGAAGCCAAGAACAGTGGAAATCCCATGAAGATCCAGGAAGCACAAGACATGGTTGTGCTTTATGATTCATTGCAACTTGCCCACAAGTGTATACTTAATTCCTTTTACGGATATGTTATGCGCAAGGGTGCTAGATGGTACTCCATGGAAATGGCTGGAGTAGTCACATATACGGGAGCAAAAATAATTCAGAATGCCCGCTTGCTGGTAGAGAAAATAGGAAAACCACTTGAACTAGATACTGATGGTATCTGGTGTGCACTTCCTGGAGATTCAAAAAGGAAGCTGACAATCTCATACCCTTGTGTTATGCTAAATGTTGATGTGGCAATCAATAATACAAATGATCAGTACCAGACACTCACAGATCCAATAAGGAAAACATATACTACTCGTAGTGAATGCTCTATAGAATTTGAGGTGGATGGACCATACAAGGCAATGATTCTTCCTGCTTCCAAGGAAGAAGGAATTCTAATTAAAAAGCGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAGCTTAAAGGTTTTGAGATCAAGCGAAGAGGTGAACTGAAACTAATAAAAGTTTTCCAGGCTGAGCTGTTTGACAAGTTTCTCCATGGCTCAACCTTAGATGAATGCTATTCAGCTGTTGCTGCTGTGGCAAATCGCTGGCTTGATCTTCTTGATAACCAAGGAAAGGATATTACAGATAGTGAGTTGCTTGATTACATCTCAGAATCAAGTACCATGAGCAAGTCATTAGCTGATTACGGTGAGCAGAAATCTTGTGCTGTCACCACTGCTAAACGTCTTGCTGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCTGTAAGCGAGCGTGCTATTCCTGTTGCAATATTTGAAACAAAAGCTGAAGTAATGAAGTACTATGTTCGAAGATGGTGCAAGGTCTCATCAGATGTTGGCATTCGATCCATAGTTGACTGGTCCTACTACAAGCAGCGGCTTTCTTCAGCAATTCAAAAAATTGTCACAATTCCTGCTGCCATGCAAAAGATTGCAAATCCTGTTCCTCGAGTAGCTCATCCGGATTGGTTGCATAAGAAGGTTCGTGAAAAGGAGGACAAGTTTCGTCAACGAAAGTTGGTTGATGTCTTTAACTCCATGAGAAGGGATGATCACTCAAAAAAGAATGGTGACTCTAATGGTGTCAGCCTTATGACAGATGAAGAGACTGTAATTGACTTGGAGGATTTTGGAAACAAGGCCAGGATTTCGCCAAGTGGTCCTAGACCAATTATACGGCATTATAAAGCTAATAATGAAGGGAATTCAATTAAGCTCAGTTGTCATGGAAATTCTGAGCAACAACATATTGATAATAGCAGCAAGGATGAGTCACTTTCACTTATTCAACAAAAGGAAATATCATCTGAAAAGATTGACAGAAATGTTGATTATCAAGGATGGCTTCAAGTAAAGAAGAGAAAGTGGAAAAGTATCCTGGAAAAGAGAAAAAAGCGAAGATTGGAGAATTCAAAGAAATCTGATAGCAGAAATGGTGTTCTTGAACAAATAAATGGTACCACTGGCAGAACAAATGTCAGTTCATATTTCAGAACGAATGAAGTAGCCCTCAAGCGGTCCCACTGGCAGATAATACAGCTACTTCAGAGCTCACACATTGGCCAACTTTTTGCCTGGGTAGTTGTTGATGGGATTATGCTTAAGATTCCTGTTTCTGTTCCTAGAGTGTTCTACCTTAACTCAAGATCACCAGTTACTGAAGAATTTCTTGGCAAAAGTGTCAAGAAGACACTTCCTCATGGAAGGCAAAGTTATAATCTGTATGAGGTTTCAATTGATGAAGTTCAATTTAGGGAAGCAAGCAAAAAACTTGCAGCTCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACTAAGGTGCCAAGTGTGTTTTATGCTATAGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAAAGTGCCAAACAAAGAAGTCTACAAGACTCATGGAATTTGAGTGAATTGCACATGAAGACCACAACCGAATGTTCTTATCTCGAACAATTGATATCCTTTTTTTACTTATATCATAGTATCTCTGAAGGACGGGCTATATATGTTGGATATTTTCCGGCATCAAAAGCAATTACATTCGTGGTAGTTAATCCATATCAAAACAAGGATTTATCACCAGCTTTTCTTGAAAGACAGTTTCACGATGCATGCCAGGCTTTGTCTATTGAGCCACCCCCACGGAATAGCATTAGTTTTAAGGTAGACTATGTTTCACATGTCAAGGATGCTGAAACTTTGATGCAAAGAACAATAAATGATCGCAGGAATGAATATCACGGACCTATGGTTGCTATCATTGAATGCCCAAATGTTCAACTAGTGAAATTGGGTATTCAATCTCTAGATGATTTTCCATGCCTGAGCATTCCTTGTAATGCCCGTGATAGTCAGTACCAGATTCTTGGTTGGCAACAAGTTGCTGGAAAAATTGGAATGCAACGCTGTGCTGCATCAGGACAATGGCTAAATGAGAGAATTGCTCTCTCAAGATATGCCCATGTACCACTCGGGAATTTTGAACTTGACTGGCTTATATTTACAGCAGATACCTTCTTCTCAAGAGCTTTGCGTGATAATCAACAGGTACTTTGGATATCTGATGGTGGTCTTCCTGATTTAGGTGGCATTAATGATGAAGAGACCTGTTTTCTTGACGAGGTCCACCAACCTGTTCTTACCTATCCTGGAGCTTACAGAAAAGTTACTGTGGAGTTAAAGATACACCACCTAGCTGTGGATGCCCTTTTAAAAAGCAACCAGGTTAATGAAATGGAAGGAGGCACTTTATTAGGATTCGATAATGAATTCAATTCTAGAGCTAATCCCACTAGTGATCAGAGTGGCTTTGATGAGGCTGCCTCATGTGCACATGCCTTTCGAGTCCTTAAACAATTGATTCAGCGGTGCCTTGCAGATGCAGTTACATCTCAAAACACATATGCGGATGCAATATTGCAACATCTGTATCGATGGCTTTGCAGCCCTCAGTCAAAACTTCACGATCCAGCTCTTCACCAGCTACTTCACAAGGTCATGCAAAAAGTCTTTGCACTGTTGTTGGCAGAGTTCCGCAAGTTGGGTGCAACAATTGTGTTTGCGAACTTCTCAAAGATTATCATAGACACGGGGAAATATGATCTGGATGCAGCCAAAGCTTACTGTGACAGTTTGTTAAGAACTATACAGTCCAGAGACTTATTTGAATGGATTGAATTGGAACCACTTCAGTTTTGGCGGTCATTGCTATTCATGGATCAGTATAACTATGGTGGAATTCCAGCAAAATCTGATGAATCTCAAGTTGACATTATATCAAGCTGGAATATTGCTGAGTATTTGCCAAAGAAAATCCAGGCAAGTTGCCTAGCGTGA 5787 0.4044 MNGDGRRRDRRDNPRRSKKQKQISSAEEELEAKLGFEVFSEGEKRLGWLLNFASSSYEDEETRKVYSCVDLYFVTQDGSSFKAKYRFRPYFYAATKNKMEMDVEAYLRRCYETQIADIKIIEKEDLDLKNHLSGLRKSYLKLSFDTVQQLMTVKSDLMHVVERNQAKSDAAEAYEFILTERREQKPQDFIDCITDLREYDVPYHVRFAIDNATMTLRFTCDPDIRSGQWYDVSVSSTGVTLEKRTDLLQRAEVRVCAFDIETTKLPLKFPDADYDLVMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPEFEGCFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFLEKRAEHHGFKMSEELGFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQTMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSEPEKFYNNHLLESETYIGGHVECLESGVFRSDIPTSFTLESSAYEQLINNLDRDLQYAIRVEGKMDLESVSNYDEVKTAIMEKLSKLRDAPIREECPLIYHLDVAAMYPNIILTNRLQPPSIVSDEVCTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYHIKKQIESDFVDGANASLSKSFLDLPKADQQSRLKDRLRKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKNSGNPMKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGDSKRKLTISYPCVMLNVDVAINNTNDQYQTLTDPIRKTYTTRSECSIEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLDECYSAVAAVANRWLDLLDNQGKDITDSELLDYISESSTMSKSLADYGEQKSCAVTTAKRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAIPVAIFETKAEVMKYYVRRWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIVTIPAAMQKIANPVPRVAHPDWLHKKVREKEDKFRQRKLVDVFNSMRRDDHSKKNGDSNGVSLMTDEETVIDLEDFGNKARISPSGPRPIIRHYKANNEGNSIKLSCHGNSEQQHIDNSSKDESLSLIQQKEISSEKIDRNVDYQGWLQVKKRKWKSILEKRKKRRLENSKKSDSRNGVLEQINGTTGRTNVSSYFRTNEVALKRSHWQIIQLLQSSHIGQLFAWVVVDGIMLKIPVSVPRVFYLNSRSPVTEEFLGKSVKKTLPHGRQSYNLYEVSIDEVQFREASKKLAALLADPDVEGIYETKVPSVFYAIVQLGCVCKVDKSAKQRSLQDSWNLSELHMKTTTECSYLEQLISFFYLYHSISEGRAIYVGYFPASKAITFVVVNPYQNKDLSPAFLERQFHDACQALSIEPPPRNSISFKVDYVSHVKDAETLMQRTINDRRNEYHGPMVAIIECPNVQLVKLGIQSLDDFPCLSIPCNARDSQYQILGWQQVAGKIGMQRCAASGQWLNERIALSRYAHVPLGNFELDWLIFTADTFFSRALRDNQQVLWISDGGLPDLGGINDEETCFLDEVHQPVLTYPGAYRKVTVELKIHHLAVDALLKSNQVNEMEGGTLLGFDNEFNSRANPTSDQSGFDEAASCAHAFRVLKQLIQRCLADAVTSQNTYADAILQHLYRWLCSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLDAAKAYCDSLLRTIQSRDLFEWIELEPLQFWRSLLFMDQYNYGGIPAKSDESQVDIISSWNIAEYLPKKIQASCLA 1928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121193g00006 1928 CDD POLBc_epsilon 515 1123 - -
Stsc121193g00006 1928 Gene3D - 250 480 IPR036397 GO:0003676
Stsc121193g00006 1928 MobiDBLite consensus disorder prediction 1216 1237 - -
Stsc121193g00006 1928 FunFam DNA polymerase epsilon catalytic subunit 942 1126 - -
Stsc121193g00006 1928 Pfam Domain of unknown function (DUF1744) 1531 1897 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Stsc121193g00006 1928 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 17 1925 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Stsc121193g00006 1928 FunFam DNA polymerase epsilon catalytic subunit 57 239 - -
Stsc121193g00006 1928 Gene3D Palm domain of DNA polymerase 765 938 IPR023211 -
Stsc121193g00006 1928 FunFam DNA polymerase epsilon catalytic subunit 768 938 - -
Stsc121193g00006 1928 MobiDBLite consensus disorder prediction 1 26 - -
Stsc121193g00006 1928 Gene3D DNA Polymerase, chain B, domain 1 52 234 - -
Stsc121193g00006 1928 CDD DNA_polB_epsilon_exo 252 455 - -
Stsc121193g00006 1928 Gene3D - 942 1126 IPR042087 -
Stsc121193g00006 1928 Pfam DNA polymerase family B 771 1066 IPR006134 GO:0000166|GO:0003677
Stsc121193g00006 1928 SUPERFAMILY Ribonuclease H-like 61 479 IPR012337 -
Stsc121193g00006 1928 SUPERFAMILY DNA/RNA polymerases 498 1116 IPR043502 -
Stsc121193g00006 1928 SMART DUF1744_2 1513 1897 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Stsc121193g00006 1928 FunFam DNA polymerase epsilon catalytic subunit 252 480 - -
Stsc121193g00006 1928 Pfam DNA polymerase family B, exonuclease domain 75 412 IPR006133 -
Stsc121193g00006 1928 SMART polmehr3 251 854 IPR006172 GO:0000166|GO:0003676|GO:0003887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121193g00006 Stsc-Chr121193 15439 33730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121193g00006 1 1923 Core DNA Replication Machinery Family AT1G08260 72.709 0.0 2910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121193g00006 K02324 - gmx:100812003 3258.39