Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121192g00011 ATGGTGACGGATTATTCGAAATCCGACACCGTGGTGTACCTCCATGGAGACCTCGATCTTCGGATCATTGAGGCTCGCCATCTTCCCAACATGGACATGCTCTCGGAGCGCTTGCGCAGATTCTTCTCTGCTCTCAATACCTGCACCGGCACCGGAAGGAAGAAGAACGGGAAGAGCCACCGCCACAGAAGGATCATCACCAGCGACCCTTACGTCACCGTTTGCATCGCTGGCGCCACCGTGGCTCGAACCCGCGTGATTTCTAACTCTCAGAATCCTACTTGGAACGAGCATTTCAAGATCCCTCTGGCTCACCCGGCCACGGAGCTAGAATTCTACGTCAAAGATAACGACATGTTCGGCGCAGACTTGATCGGAATCGCATTCGTCTCCGCGGGTAAGATCTTAACCGGTGAAACCGTCAGCGGCTGGTTTCCGATCATCGGCACCTCCGGTAGGCCTCCCAAACCTAATTGCGCGGTTCTACTCGAGATGAAATTCAAGAAATGCGAGGACTCTCTTTTGTACAGATCCAGCATTGCACTCGAACCTGACCGGTTCGCGGTTCGTGATACGTATTTTCCAATTCGGCACGGAGGTTCGGTGACGCTGTACCAGGACGCGCACGTGCCGGATGCGATGCTGCCAGAGATTGGATTGGATGATGGAGTTGTGTTTGAGCAAGGTAAGTGCTGGGAAGACATCTGCCATGCGATCTTGGAGGCCCATCATTTGGTATACGTTGTGGGCTGGTCCATTTATGATAAGGTGAAGCTCGTTAGAGAGCCCACAAAGCCTTTACCTAGCGGTGGAGATTTGAACCTCGGTGAGTTGCTCAAGTACAAGTCTCAAGAAGGCGTTAGAGTCCTCATGTTGGTCTGGGATGACAAGACTTCGCACAACAAATTCTTCATTCACACGGTTGTTGGAACACTCTTCACGCATCATCAAAAATGTGTAATAGTTGACACTCAAGGACAGGGCAACCATAGAAAGATAACAGCATTTATAGGTGGTCTAGATCTTTGTGATGGGCGATATGATACACCTGATCACAGGATTGTCCGAGATCTTGACACCGTTTTCCAGAATGATCATCATAATCCCACATTTCCTGCAGGAATCAAGTGTCCAAGGCAACCATGGCATGATTTACATTGCAAAATTGAGGGTCCTGCTGTGTATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAAGCTGCTAGATGGTCAGATCCTTCTGAGTCAGTTCCAAATGATCATCCTGACTTATGGGTTTGCAAGGAAGATGACCCTCAAAACTGGAATGTCCAGATTTTTCGATCTATTGACTCTGGCTCAGTGAAAGGGTTTCCTAAGAATGTACCCGAAGCTGAGGCTCAGAACCTCGTTTGTGCAAAAAATTTGGTGATTGACAAGAGTATTCAGACAGCATACATACATGCAATAAGATCTGCTCGAAATTTTATTTACATCGAGAATCAATATTTCATCGGATCGTCGTTTGCATGGCCATCCTACAAAGAAGCAGGTGCTGATAACTTAATTCCTATGGAGTTGGCACTGAAGATAGTCAGTAAGATTAGAGCCAAGGAGAGATTTACAGTTTATATTGTCATCCCAATGTTTCCTGAAGGTGTGCCTTCTTCAGTCGCAATGCAAGAGATTCTGTTTTGGCAGGGACAAACTATGCAGATGATGTATGAAATCATAGCTCGGGAGTTAAAAGCTGCAAACATTGAAAACAGTCACCCACGAGACTATCTAAACTTTTACTGTCTTGGAACCAGGGAGAATTCAACTGAAGTTACAAATTCACATGGTTCTTCATTTTCAAATGGTAGCGAACAGGTTGCATCTTCCAAGTACAATCGTTTTATGGTTTATGTACATGCGAAAGGAATGGTTGTAGATGATGAATATGTTATAGTCGGATCAGCCAACATTAATCAAAGATCAATGGCTGGATCAAGAGATACAGAGATCGCAATGGGTGCATATCAACCCCATCATACATGGGGCAAGAAACAGAGACATCCACACGGTCATGTATATGGATACAGAATGTCTTTATGGGCGGAACACATGGGTTACATTGATGAATGCTTCAAGGAGCCTGAAACCTTGGAATGTGTCCAAACTGTGAACAAGATTGCTGTAGAGAACTGGCATAAGTATACAGCAGAATCTTATGCACCATTACAAGGGCACCTCATGAGATACCCTATAAGAGTAGATGCAAATGGCAAGGTCAGCTCCTTACCAGGTTTTGAGACTTTTCCAGATGTTGGTGGCAAAGTACTTGGCTCACGCTCAACCCTTCCCTCTGCTCTAACCACTTAG 2346 0.4587 MVTDYSKSDTVVYLHGDLDLRIIEARHLPNMDMLSERLRRFFSALNTCTGTGRKKNGKSHRHRRIITSDPYVTVCIAGATVARTRVISNSQNPTWNEHFKIPLAHPATELEFYVKDNDMFGADLIGIAFVSAGKILTGETVSGWFPIIGTSGRPPKPNCAVLLEMKFKKCEDSLLYRSSIALEPDRFAVRDTYFPIRHGGSVTLYQDAHVPDAMLPEIGLDDGVVFEQGKCWEDICHAILEAHHLVYVVGWSIYDKVKLVREPTKPLPSGGDLNLGELLKYKSQEGVRVLMLVWDDKTSHNKFFIHTVVGTLFTHHQKCVIVDTQGQGNHRKITAFIGGLDLCDGRYDTPDHRIVRDLDTVFQNDHHNPTFPAGIKCPRQPWHDLHCKIEGPAVYDILTNFEQRWRKAARWSDPSESVPNDHPDLWVCKEDDPQNWNVQIFRSIDSGSVKGFPKNVPEAEAQNLVCAKNLVIDKSIQTAYIHAIRSARNFIYIENQYFIGSSFAWPSYKEAGADNLIPMELALKIVSKIRAKERFTVYIVIPMFPEGVPSSVAMQEILFWQGQTMQMMYEIIARELKAANIENSHPRDYLNFYCLGTRENSTEVTNSHGSSFSNGSEQVASSKYNRFMVYVHAKGMVVDDEYVIVGSANINQRSMAGSRDTEIAMGAYQPHHTWGKKQRHPHGHVYGYRMSLWAEHMGYIDECFKEPETLECVQTVNKIAVENWHKYTAESYAPLQGHLMRYPIRVDANGKVSSLPGFETFPDVGGKVLGSRSTLPSALTT 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121192g00011 781 Pfam C2 domain 16 147 IPR000008 -
Stsc121192g00011 781 Gene3D Endonuclease Chain A 225 430 - -
Stsc121192g00011 781 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 168 IPR035892 -
Stsc121192g00011 781 PANTHER PHOSPHOLIPASE D 305 772 IPR015679 -
Stsc121192g00011 781 SUPERFAMILY Phospholipase D/nuclease 193 424 - -
Stsc121192g00011 781 Pfam Phospholipase D C terminal 701 771 IPR024632 -
Stsc121192g00011 781 PIRSF PLD_plant 302 781 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc121192g00011 781 PIRSF PLD_plant 3 308 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Stsc121192g00011 781 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Stsc121192g00011 781 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 627 654 IPR001736 GO:0003824
Stsc121192g00011 781 SUPERFAMILY Phospholipase D/nuclease 459 712 - -
Stsc121192g00011 781 Gene3D Endonuclease Chain A 439 673 - -
Stsc121192g00011 781 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 311 346 IPR001736 GO:0003824
Stsc121192g00011 781 Gene3D C2 domain 15 175 IPR035892 -
Stsc121192g00011 781 Pfam PLD-like domain 535 663 IPR025202 -
Stsc121192g00011 781 Pfam Phospholipase D Active site motif 312 346 IPR001736 GO:0003824
Stsc121192g00011 781 SMART pld_4 627 654 IPR001736 GO:0003824
Stsc121192g00011 781 SMART pld_4 311 346 IPR001736 GO:0003824
Stsc121192g00011 781 CDD C2_plant_PLD 11 167 - -
Stsc121192g00011 781 SMART C2_3c 17 144 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121192g00011 Stsc-Chr121192 43539 47530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121192g00011 11 780 Phospholipase D Gene Family (Wang group) AT2G42010 49.178 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121192g00011 K01115 - gmx:100795859 1270.76