Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121192g00007 ATGCAGGTTCGTGCTTCTTCTGCTGCAAACTCACGAATTTGTCACACTCCTCAATATTCTGATATTCCAGCCACAATGATGAGCTTCCACCCACCCCCGGCTTTTGCTTCATCATCTAACCTTGAACTCGATCAATGCAAAAGTCAGTTACAAGCTGAAGACAAGAGTAACCATTTCAATTTTTACGCACACTACACACGGCCAATGCATGAAATCACGATTTCAAAAAATGACAAGCCAAAACTCCTCAGTCAGTTAACTTCTATAATGTCTGAGACTGGGCTTGACATTCAAGAAGGACATGCTTTTTCAACATTGGATGGATACTCATTGGATGTTTTTGTTGTTGGTGGTTGGCCCGTTGAGGAGACAGAGAAATTAAAACGTGTACTAGCAAAGAAAATTCAAAAACTTGAGGAGCAACCACAGTTGAAAGAAAATGGAACTATTCCTACTGCAGAGCAAGGGAACAATGGGTTCAAATTTATCTCTAGTCATGTAAATTTTGCCACAAATGGAAGTGATGTCTGGGATGAAAGATGTTTGAGATGTGAAAAGAAAATTGCATCTGGATCTTTCAGTGATCTGTATAAGGGTACTTTCTGTAATCAAGATGTGGCTATCAAAGTTCTTAAGGAGGACAATTTGAATGAAAATATACAGAGGGAGTTTTATCAAGAAATCTGTATCCTAAGTAAAATTCAACATAAAAATGTTGTGAGATTTTTTGGTGCCTGTACAAAACCCCCTAACCATTACCTTGTCACAGAATATATGTCTGGTGGAAGTATGTATGACTTTCTTCATGTAAAGAAGGCTGTGCTTTCTCTTCCACGGTTGCTTAAAGTTGCCATTGACGTTTCAGAAGGAATGAAATATTTGCATCAGAATAATATCATACATCGAGACCTCAAAACAGCTAATCTCTTAATGGATGATAAGGGGGTAGTTAAGGTTGCTGATTTTGGGGTGGCCAGAGTGCACAATCAATCCGGTGTGATGACTGCAGAAACTGGAACTTATCGATGGATGGCTCCAGAGGTGATTGAGCATAAGCCATATGATCATAAAGCGGATGTTTATTGTTTTGGCATTGTCCTTTGGGAGCTTCTTACAGGAAAGCTTCCTTATGAGCATTTGTCCCCATTGCAAGCAGCAGTTGGAGTGGTCCAAAAGGGTTTGAGGCCAAAAATTCCAAGGCATACTCATCCAATGTTGGTGGAATTACTCAACCGGTGCTGGCACCAAGATCCATCTTCAAGACCCAATTTCTCAGAAATTCTGGAATTTCTGTTGCACATGACCATAAAGGTTGCTGGGAAAGGTGATGGTAATTAA 1338 0.3999 MQVRASSAANSRICHTPQYSDIPATMMSFHPPPAFASSSNLELDQCKSQLQAEDKSNHFNFYAHYTRPMHEITISKNDKPKLLSQLTSIMSETGLDIQEGHAFSTLDGYSLDVFVVGGWPVEETEKLKRVLAKKIQKLEEQPQLKENGTIPTAEQGNNGFKFISSHVNFATNGSDVWDERCLRCEKKIASGSFSDLYKGTFCNQDVAIKVLKEDNLNENIQREFYQEICILSKIQHKNVVRFFGACTKPPNHYLVTEYMSGGSMYDFLHVKKAVLSLPRLLKVAIDVSEGMKYLHQNNIIHRDLKTANLLMDDKGVVKVADFGVARVHNQSGVMTAETGTYRWMAPEVIEHKPYDHKADVYCFGIVLWELLTGKLPYEHLSPLQAAVGVVQKGLRPKIPRHTHPMLVELLNRCWHQDPSSRPNFSEILEFLLHMTIKVAGKGDGN 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121192g00007 445 ProSiteProfiles ACT domain profile. 71 151 IPR002912 -
Stsc121192g00007 445 Pfam Protein tyrosine and serine/threonine kinase 183 431 IPR001245 GO:0004672|GO:0006468
Stsc121192g00007 445 SUPERFAMILY Protein kinase-like (PK-like) 175 431 IPR011009 -
Stsc121192g00007 445 Coils Coil 121 141 - -
Stsc121192g00007 445 CDD STKc_MAP3K-like 188 431 - -
Stsc121192g00007 445 PRINTS Tyrosine kinase catalytic domain signature 293 311 IPR001245 GO:0004672|GO:0006468
Stsc121192g00007 445 PRINTS Tyrosine kinase catalytic domain signature 339 349 IPR001245 GO:0004672|GO:0006468
Stsc121192g00007 445 PRINTS Tyrosine kinase catalytic domain signature 358 380 IPR001245 GO:0004672|GO:0006468
Stsc121192g00007 445 PRINTS Tyrosine kinase catalytic domain signature 402 424 IPR001245 GO:0004672|GO:0006468
Stsc121192g00007 445 PRINTS Tyrosine kinase catalytic domain signature 256 269 IPR001245 GO:0004672|GO:0006468
Stsc121192g00007 445 Gene3D Phosphorylase Kinase; domain 1 178 260 - -
Stsc121192g00007 445 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 107 431 - -
Stsc121192g00007 445 SMART serkin_6 182 431 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121192g00007 445 ProSiteProfiles Protein kinase domain profile. 182 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121192g00007 445 Gene3D Transferase(Phosphotransferase) domain 1 261 441 - -
Stsc121192g00007 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 299 311 IPR008271 GO:0004672|GO:0006468
Stsc121192g00007 445 SUPERFAMILY ACT-like 68 141 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121192g00007 Stsc-Chr121192 27180 31267 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121192g00007 32 439 MAP Kinase Kinase Kinase AT4G35780 59.756 1.28e-177 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc121192g00007 PK_Tyr_Ser-Thr 4.4e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121192g00007 - - gmx:100818047 629.017