Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121192g00005 ATGCATATGGGAGATACAGAGAGTCGCAGTAGCAGAATTTGCAATCGTTGGTGGAATCAGAGTGGGCGAAAGCAGAGGCAGAAGGTTGAAGTTTATAGCGAGGTTCTTACTAGACTCAAGGAATTGAATGTCAAAGAGGCTTCAGTTCCTGGTTTTGATGATGAGCTTTGGGCTCACTTCTACTATCTTCCAACTAGGTATGCGTTGGATATGAATGTGGAGAGGGCACAAGATGTGCTCATGCATAAAAGGTTGCTTCACATGGCACGATTCCCTGCTACTGCAACTGGACCTGCAATTGAAGTTCGTCTTGTTCAGGTTCGTGCTTCTTCTGCTGCAAACTCACGAATTTGTCACACTCCTCAATATTCTGATATTCCAGCCACAATGATGAGCTTCCACCCACCCCCGGCTTTTGCTTCATCATCTAACCTTGAACTCGATCAATGCAAAAGTCAGTTACAAGCTGAAGACAAGAGTAACCATTTCAATTTTTACGCACACTACACACGGCCAATGCATGAAATCACGATTTCAAAAAATGACAAGCCAAAACTCCTCAGTCAGTTAACTTCTATAATGTCTGAGACTGGGCTTGACATTCAAGAAGGACATGCTTTTTCAACATTGGATGGATACTCATTGGATGTTTTTGTTGTTGGTGGTTGGCCCGTTGAGGAGACAGAGAAATTAAAACGTGTACTAGCAAAGAAAATTCAAAAACTTGAGGAGCAACCACAGTTGAAAGAAAATGGAACTATTCCTACTGCAGAGCAAGGGAACAATGGGTTCAAATTTATCTCTAGTCATGTAAATTTTGCCACAAATGGAAGTGATGTCTGGGATGAAAGATGTTTGAGATGTGAAAAGAAAATTGCATCTGGATCTTTCAGTGATCTGTATAAGGGTACTTTCTGTAATCAAGATGTGGCTATCAAAGTTCTTAAGGAGGACAATTTGAATGAAAATATACAGAGGGAGTTTTATCAAGAAATCTGTATCCTAAGTAAAATTCAACATAAAAATGTTGTGAGATTTTTTGGTGCCTGTACAAAACCCCCTAACCATTACCTTGTCACAGAATATATGTCTGGTGGAAGTATGTATGACTTTCTTCATGTAAAGAAGGCTGTGCTTTCTCTTCCACGGTTGCTTAAAGTTGCCATTGACGTTTCAGAAGGAATGAAATATTTGCATCAGAATAATATCATACATCGAGACCTCAAAACAGCTAATCTCTTAATGGATGATAAGGGGGTAGTTAAGGTTGCTGATTTTGGGGTGGCCAGAGTGCACAATCAATCCGGTGTGATGACTGCAGAAACTGGAACTTATCGATGGATGGCTCCAGAGGTGATTGAGCATAAGCCATATGATCATAAAGCGGATGTTTATTGTTTTGGCATTGTCCTTTGGGAGCTTCTTACAGGAAAGCTTCCTTATGAGCATTTGTCCCCATTGCAAGCAGCAGTTGGAGTGGTCCAAAAGGGTTTGAGGCCAAAAATTCCAAGGCATACTCATCCAATGTTGGTGGAATTACTCAACCGGTGCTGGCACCAAGATCCATCTTCAAGACCCAATTTCTCAGAAATTCTGGAATTTCTGTTGCACATGACCATAAAGGTTGCTGGGAAAGGTGATGGTAATTAA 1650 0.4097 MHMGDTESRSSRICNRWWNQSGRKQRQKVEVYSEVLTRLKELNVKEASVPGFDDELWAHFYYLPTRYALDMNVERAQDVLMHKRLLHMARFPATATGPAIEVRLVQVRASSAANSRICHTPQYSDIPATMMSFHPPPAFASSSNLELDQCKSQLQAEDKSNHFNFYAHYTRPMHEITISKNDKPKLLSQLTSIMSETGLDIQEGHAFSTLDGYSLDVFVVGGWPVEETEKLKRVLAKKIQKLEEQPQLKENGTIPTAEQGNNGFKFISSHVNFATNGSDVWDERCLRCEKKIASGSFSDLYKGTFCNQDVAIKVLKEDNLNENIQREFYQEICILSKIQHKNVVRFFGACTKPPNHYLVTEYMSGGSMYDFLHVKKAVLSLPRLLKVAIDVSEGMKYLHQNNIIHRDLKTANLLMDDKGVVKVADFGVARVHNQSGVMTAETGTYRWMAPEVIEHKPYDHKADVYCFGIVLWELLTGKLPYEHLSPLQAAVGVVQKGLRPKIPRHTHPMLVELLNRCWHQDPSSRPNFSEILEFLLHMTIKVAGKGDGN 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121192g00005 549 CDD STKc_MAP3K-like 292 535 - -
Stsc121192g00005 549 SUPERFAMILY Protein kinase-like (PK-like) 279 535 IPR011009 -
Stsc121192g00005 549 ProSiteProfiles ACT domain profile. 175 255 IPR002912 -
Stsc121192g00005 549 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 164 535 - -
Stsc121192g00005 549 Pfam Protein tyrosine and serine/threonine kinase 287 535 IPR001245 GO:0004672|GO:0006468
Stsc121192g00005 549 ProSitePatterns Serine/Threonine protein kinases active-site signature. 403 415 IPR008271 GO:0004672|GO:0006468
Stsc121192g00005 549 ProSiteProfiles Protein kinase domain profile. 286 540 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121192g00005 549 Gene3D Transferase(Phosphotransferase) domain 1 365 545 - -
Stsc121192g00005 549 SMART serkin_6 286 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121192g00005 549 PRINTS Tyrosine kinase catalytic domain signature 443 453 IPR001245 GO:0004672|GO:0006468
Stsc121192g00005 549 PRINTS Tyrosine kinase catalytic domain signature 397 415 IPR001245 GO:0004672|GO:0006468
Stsc121192g00005 549 PRINTS Tyrosine kinase catalytic domain signature 506 528 IPR001245 GO:0004672|GO:0006468
Stsc121192g00005 549 PRINTS Tyrosine kinase catalytic domain signature 462 484 IPR001245 GO:0004672|GO:0006468
Stsc121192g00005 549 PRINTS Tyrosine kinase catalytic domain signature 360 373 IPR001245 GO:0004672|GO:0006468
Stsc121192g00005 549 SUPERFAMILY ACT-like 172 245 IPR045865 -
Stsc121192g00005 549 Gene3D Phosphorylase Kinase; domain 1 282 364 - -
Stsc121192g00005 549 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121192g00005 Stsc-Chr121192 26927 31267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121192g00005 20 543 MAP Kinase Kinase Kinase AT4G35780 56.981 0.0 601
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Stsc121192g00005 PK_Tyr_Ser-Thr 7.5e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121192g00005 - - gmx:100818047 769.615