Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121192g00004 ATGTCCTCTTCTTCGGCGGCGAGAACCACCGTTGATAACGAGGAGGGGAAGCTCTACCCTTCCCCACTTGCCTCTCACGACGACGTCGTCAAGGATCCTGCTGTCTTTTGGGACACTCTCAGACGCTTTCACCTCCGTCTCGGGACCAAATTTATGATTCCTGTGATTGGAGGGAAGGAGCTTGATTTGCACGTCCTGTACGTGGAGGTTACGAGGAGAAGTGGCTATGAGAAGGTGGTTGCGGAGAAGAAATGGAGGGAAGTGGGAACTGTATTCAGGTTCTCAGCGACGACCACGAGTGCTTCTTTTGTGCTAAGGAAACACTACCGCAACCTTCTTTACCATTACGAACAAGTTCACTTCTTTAATGTGAAGGGTCCTCTCTACACACCATCAGCAGATTCATTTTCTAGCAGCAAGCACTCTTGGAGATCTGAGCTGGCTATTGTTGAATATTCTCCCAAGCCAATGAACCATGCTAAAGGTTCCCACCCTCAAGACACTTCATCAAGTCTTACAGGGAGGGGAACGATAGAGGGAAAAATTGAGTGTGGCTATTTAGTGTCAGTGAAAGTGGGTTCAGAGGTTCTAAGAGGAGTGCTATACCATCCAGAGGAACTTGTTCCTCCCCCAACTGTTCCACAAAGTAGCAATGCTATTGTACCCTATGGCTATAAACCTCGCCATTCCGGCGGCCGGAGGAGGAGGAACAAGAGAAAGTGGGACCCGAATTACCCGAAGCCAAACAGGAGTGGCTATAACTTCTTCTTTGCTGAGAAGCATTACAAGCTCAAGTCACTCTATCCAAATAGAGAGAGGGAGTTTACCAAAATGATTGGCCAGTCTTGGAATAGTCTCAGCCCAGAAGAAAGAATGGTAAGCGCTTAA 888 0.4809 MSSSSAARTTVDNEEGKLYPSPLASHDDVVKDPAVFWDTLRRFHLRLGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGTVFRFSATTTSASFVLRKHYRNLLYHYEQVHFFNVKGPLYTPSADSFSSSKHSWRSELAIVEYSPKPMNHAKGSHPQDTSSSLTGRGTIEGKIECGYLVSVKVGSEVLRGVLYHPEELVPPPTVPQSSNAIVPYGYKPRHSGGRRRRNKRKWDPNYPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGQSWNSLSPEERMVSA 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121192g00004 295 Pfam ARID/BRIGHT DNA binding domain 36 117 IPR001606 GO:0003677
Stsc121192g00004 295 Gene3D High mobility group box domain 231 293 IPR036910 -
Stsc121192g00004 295 Pfam HMG (high mobility group) box 246 292 IPR009071 -
Stsc121192g00004 295 SUPERFAMILY ARID-like 26 126 IPR036431 GO:0003677
Stsc121192g00004 295 CDD ARID_HMGB9-like 32 117 IPR045303 GO:0003677
Stsc121192g00004 295 MobiDBLite consensus disorder prediction 211 246 - -
Stsc121192g00004 295 SUPERFAMILY HMG-box 233 292 IPR036910 -
Stsc121192g00004 295 SMART ARID_2 27 117 - -
Stsc121192g00004 295 ProSiteProfiles ARID domain profile. 30 121 IPR001606 GO:0003677
Stsc121192g00004 295 SMART bright_3 31 122 IPR001606 GO:0003677
Stsc121192g00004 295 Gene3D - 23 127 IPR036431 GO:0003677
Stsc121192g00004 295 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 246 295 IPR009071 -
Stsc121192g00004 295 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 9 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121192g00004 Stsc-Chr121192 23764 26034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121192g00004 17 293 ARID Transcription Factor Family AT1G76110 66.078 5.61e-120 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc121192g00004 ARID 2.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121192g00004 - - adu:107460270 529.25