Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121190g00006 ATGTATCTTTCAAAGGGTTGCAAGCATCAAGTTCTTTTCGCCTTGTGGTTCTGCTGCTACCTGCTACATGTTTCGGCACAGAACAATGTCACTGACCCTGTTGAAGTTGAAGCATTGAATGCCATAAAGCAAAGATTGCATGACCCTAATGGAAATTTGAGCAACTGGGGACGTAATGATCCGTGTACATCGAAGTGGACAGGAGTTTTGTGCTACAACAAAACATTGGATGATGGATATCTACATGTTCAAGAACTGCAATTACTGAATTTGAACCTGTCAGGAAATTTGGCACCCGAACTCGGCAACTTAACACGTTTGCTAAGATTGAACTTTATGTGGAACAACATAACTGGGAGTATTCCGAAGGAAATCGGCAACATCAAAACTTTGCTACTCTTGCTTCTGAATGGAAACCAATTAACTGGTCCACTACCGGATGAGCTCGGCTATCTTCCGAATTTGGATAGGATACAAATTGATCAGAACAATATATCAGGACCTGTGCCTACATCATTTGCAAACCTGAACAAGACAAAGCACTTTCACATGAACAATAATTCACTTAGCGGACAAATCCCGCCGGAACTTTCCCGGTTGCCAAATCTTGTTCATCTTCTTCTTGACAACAACAAATTAACAGGATATCTTCCCAGTGACCTCTACAAGTTGCCGAACTTACTTATAATTCAACTTGATAACAATAACTTTGAGGGAAATACTATTCCAAGTTCTTATGGCAACATGTCAAAACTGCTGAAAATGAGTCTTAGGAATTGCAACTTGACAGGACCAGTTCCTGATTTAAGCAGGATACCACACCTTCTTTATCTGGACCTCAGTTCCAATAAGTTGAGTGGATCAATTCCTAGGAACAAGCTTTCCAACAACATCACAACCATTGATTTATCGAACAACAAGCTTACCGGAACTATTCCACCCTACTTTTCTAGTCTTCCTGTTCTTCAGAGATTGTCTCTTGAAAACAATTCATTGAATGGCAGTGTTTCTTCCACCATTTGGCAGAACAAGACTTTGAACGGAAAAGAATTTATCTTGGAGTTGCAAAACAATGACCTTACAAGCATATCTGGCACTACTGATATTCCTCCAAATGTCACACTCTCGCTTGATGGGAATCCTCTATGCTCAAATAATAAGTCCCTGGTTCAATTCTGTGGATCTGAGACTGCTGACAATAACACAAATGGCATTGTTTCAATAGATTCCAGTTCATGCCCTGCTCAAGCGTGCCCTCCGCCGTTTGAATATTCCTTGGATTGTTTCTGTGCAGCACCATTGCTTGTTAGTTATCGGCTGAAAAGTCCTGGATTTTCGGATTTTCGACCATATGTGATTACCTTTGACGAATACCTGAGCAACGGTCTTAGTATAGAGATGGATCAACTACAATTTGATTACTATTGGCAAGCCGGACCTCGATTGAGAATGGACTTGAAGCTTTTTCCGGTTTATGTTGACAACAGAAGCTCTCATGTTTTCAATACAAGCGAGCTCCTACGGCTCATGACCATGTTCACCGGATGGAGCATTCCAGACAATGATTTGTTTGGTCCTTATGAGTTACTTGGGTTCGATCTCCTTGATCCTTACAAGAATGCGGCCATCCCCAGGTCTTCAAAATCAAGTATAAGCACAGGTGCTTTGGCTGGTATAATTTTAGGATCAATTGCCTGCGCGGTGACATTATCTGCAATCGTTACACTCCTTATATTACGAGCAAAGTTGAAAGATCATCCTGTGGTTTCAAAACGACGTCATTCATCGAAAATCTCAATAAAAATTGATGGTGTAAGGGCCTTCACTTTTGGAGAACTGTCTGCTGCTACAAACAATTTTAGCAGCTCTTCTCAAGTTGGACAAGGGGGCTACGGCAAGGTTTACAAAGGTATTCTTTCCGATGGCACCGTTGTTGCCATTAAACGTGCTCAGGAGGGTTCGCTGCAAGGTGAGAAAGAGTTCCTCACAGAAATATCATTGCTATCGAGGTTACATCATCGCAACCTTGTGTCTCTCATTGGATACTGTGATGAAGAGGGTGAACAGATGCTGGTTTATGAATTCATGCCAAATGGCACACTAAGGGAACACATTTCTGTTACAGCAAAAGAGCCTCTGAGTTTCGCCATGAGGTTGAAGGTCGCGCTAGGATCAGCAAAGGGTCTTATGTACTTACACAATGAAGCTGATCCACCAATATTTCACAGAGATGTAAAAGCCAGCAACATACTATTGGACTCAAAGTTCACAGCGAAAGTAGCTGATTTTGGACTTTCACGACTCGCTCCGGTTCCTGATCTTGAAGGAGTCGTGCCTGGACATGTATCCACAGTGGTAAAGGGCACCCCGGGTTATCTTGATCCAGAGTACTTCCTAACTCACAAGTTGACCGACAAAAGCGATGTTTATAGTCTCGGGGTTGTGTTTCTGGAACTTTTGACTGGGATGCAACCAATCTCACATGGCAAGAATATTGTTAGAGAGGTTAATGTTGCATATCAATCCGGTATTATATTTTCGGTTATTGATGACCGCATGGGGTCCTATCCATCTGAGCATGTAGAGAAATTCTTGAACCTGGCCCTGAAGTGTTGCGAAGATGAGCCAGAAGCACGGCCTAAAATGGCAGAGGTGGTTAGGGAACTGGAAAACATATGGTCCATGATGCCGGAATCAGATACCCGGAGATCCGAATCGATAACCAGCGATTCAGGAAAGTTAAGTACAAGTACACCATCTTCATCTTCTGCTATAAAGACTCCATTTGTATCAGGAGATGTTTCAGGTAGTGACCTTATTAGTGGAGTAATACCAAGCATCAAGCCAAGATAG 2853 0.4231 MYLSKGCKHQVLFALWFCCYLLHVSAQNNVTDPVEVEALNAIKQRLHDPNGNLSNWGRNDPCTSKWTGVLCYNKTLDDGYLHVQELQLLNLNLSGNLAPELGNLTRLLRLNFMWNNITGSIPKEIGNIKTLLLLLLNGNQLTGPLPDELGYLPNLDRIQIDQNNISGPVPTSFANLNKTKHFHMNNNSLSGQIPPELSRLPNLVHLLLDNNKLTGYLPSDLYKLPNLLIIQLDNNNFEGNTIPSSYGNMSKLLKMSLRNCNLTGPVPDLSRIPHLLYLDLSSNKLSGSIPRNKLSNNITTIDLSNNKLTGTIPPYFSSLPVLQRLSLENNSLNGSVSSTIWQNKTLNGKEFILELQNNDLTSISGTTDIPPNVTLSLDGNPLCSNNKSLVQFCGSETADNNTNGIVSIDSSSCPAQACPPPFEYSLDCFCAAPLLVSYRLKSPGFSDFRPYVITFDEYLSNGLSIEMDQLQFDYYWQAGPRLRMDLKLFPVYVDNRSSHVFNTSELLRLMTMFTGWSIPDNDLFGPYELLGFDLLDPYKNAAIPRSSKSSISTGALAGIILGSIACAVTLSAIVTLLILRAKLKDHPVVSKRRHSSKISIKIDGVRAFTFGELSAATNNFSSSSQVGQGGYGKVYKGILSDGTVVAIKRAQEGSLQGEKEFLTEISLLSRLHHRNLVSLIGYCDEEGEQMLVYEFMPNGTLREHISVTAKEPLSFAMRLKVALGSAKGLMYLHNEADPPIFHRDVKASNILLDSKFTAKVADFGLSRLAPVPDLEGVVPGHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGMQPISHGKNIVREVNVAYQSGIIFSVIDDRMGSYPSEHVEKFLNLALKCCEDEPEARPKMAEVVRELENIWSMMPESDTRRSESITSDSGKLSTSTPSSSSAIKTPFVSGDVSGSDLISGVIPSIKPR 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121190g00006 950 SUPERFAMILY L domain-like 42 394 - -
Stsc121190g00006 950 Pfam Protein kinase domain 621 887 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121190g00006 950 CDD STKc_IRAK 626 892 - -
Stsc121190g00006 950 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Stsc121190g00006 950 PANTHER RECEPTOR-LIKE PROTEIN 55 42 893 - -
Stsc121190g00006 950 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 696 906 - -
Stsc121190g00006 950 ProSiteProfiles Protein kinase domain profile. 620 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121190g00006 950 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g06840 33 194 - -
Stsc121190g00006 950 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Stsc121190g00006 950 FunFam Leucine-rich repeat protein kinase family protein 584 695 - -
Stsc121190g00006 950 Gene3D Transferase(Phosphotransferase) domain 1 696 913 - -
Stsc121190g00006 950 Pfam Leucine rich repeat N-terminal domain 35 71 IPR013210 -
Stsc121190g00006 950 Gene3D Phosphorylase Kinase; domain 1 584 695 - -
Stsc121190g00006 950 Gene3D Ribonuclease Inhibitor 188 291 IPR032675 -
Stsc121190g00006 950 MobiDBLite consensus disorder prediction 897 930 - -
Stsc121190g00006 950 SUPERFAMILY Protein kinase-like (PK-like) 605 914 IPR011009 -
Stsc121190g00006 950 Gene3D Ribonuclease Inhibitor 292 417 IPR032675 -
Stsc121190g00006 950 MobiDBLite consensus disorder prediction 897 950 - -
Stsc121190g00006 950 SMART serkin_6 620 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121190g00006 950 Pfam Leucine rich repeat 153 213 IPR001611 GO:0005515
Stsc121190g00006 950 Gene3D Ribonuclease Inhibitor 34 187 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121190g00006 Stsc-Chr121190 29939 36594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121190g00006 9 902 Receptor kinase-like Gene Family AT5G01950 58.991 0.0 993
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Stsc121190g00006 Pkinase 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121190g00006 - - gmx:100799888 1480.69