LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc121187g00002	ATGATGTGCCTGCAACAACAGCTACAACAACTACTACTACTAATTCTTCTACAGCAACAACAAGTGGAGGANNNNNNNNNNGATCAGAAACATGCTCTTGCAGTTGCTGTGGCAACAGCTGAAGCTGCCATGGCAACTGCTCAAGCTGCAGTTGAAGCAGCAAGGCTGAACAAGCCTAACAATAATACTACCAATAATAATAATAACAATAATTATAATAATAATTACAATAATGGTGCTCCTAATCATCATCATCATCACCATCACCATCATGCTAGGGTGCATTATTCTGCTATAGTGATACAAACTGCTTTTAGAGGATACTTGGCAAGAAGAGCACTAAGAGCATTGAAGGGGTTGGTGAAGTTGCAAGCATTGGTAAGAGGACACAATGTAAGGAAACAAGCAAAGATGACACTAAGGTGCATGCAGGCACTTGTTAGGGTCCAAGCAAGGGTTCTTGATCAGAGGATAAGGTCTTCATCACTTGAAGGAAGTAGAAAATCCACATTCAGTGACACTGCTAGTGTTTGGGATCATTCCCGGTACCTTCAGGACATTTCTGATAGAAAATCACTATCAAGAGAAGGAAGCAGCATTGCAGATGATTGGGATGAACGTCCTCACACAGTTGAAGAAGTGAAGGCAATGTTGCAGCAGAGAAAGGAAGCTGCCATGAAAAGGGACAAATCATTATCTCAAGCTTTTTCCCAACAGATTTGGAGGAATGGAAGGAAATCGTCGATTGGAAACGAAGATGAGCTCGAAGAGAGGCCGAAGTGGCTCGACCGATGGATGGCCACGAAGCCATGGGAGACAAGAGGAAGAGCTTCAACTGATCAAAGAGATCCAATTAAGACGGTTGAAATCGATACCTCGCAGCCATACTCATACCTTGGAACCAATTATAGAAGATCACATCCAAACTATCAGTATAATCCTCACCACCATCAGCCTCAAAGGCATTCCATTGCTTCGCCGCTCCATAGAACTCACCAAAATGGATCCCTTCACCACTCCCCCGCAACACCGTCTCCGGCGAAATCAAGGCCGATCCAAGTCCGGTCCGCGAGCCCTCGTTGTGTTAGAGATGATAGAAGCTACCACACTTCTCAGACACCAAGCTTAAGGTCTAATTATCACTACACCGGCAGCTTGTGCCAAAATGGCGGCCGAGCCGGAACTAGTAGTAGTGGTAGTGGTGGTGGTGGTACATTGCCTAATTATATGGCTGCGACCGAGTCCGCCAAGGCTAGGATTCGGTCGCAGAGTGCGCCGAGGCAGAGGCCCTCGACGCCGGAGAGGGATAGAGTTGGTGGTGTAAAGAAAAGGCTCTCATTTCCTGTTCCTCCTGATCCATACAATGTAGGAATGGGGTATGGAAATTATGGCCATAGTTTAAGGAGTCCAAGCTTCAAGAGTGTGAGTGCTTCACACTTTGGGTTGGAGCAACAATCAAATTACTCTTCTTGTTGCACTGAGAGTCTTGGTGGTGAGATTTCTCCTTCTTCAACTAGTGATCTTAGAAGGTGGTTGAGGTAA	1542	0.454	MMCLQQQLQQLLLLILLQQQQVEXXXXDQKHALAVAVATAEAAMATAQAAVEAARLNKPNNNTTNNNNNNNYNNNYNNGAPNHHHHHHHHHARVHYSAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSSLEGSRKSTFSDTASVWDHSRYLQDISDRKSLSREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKSLSQAFSQQIWRNGRKSSIGNEDELEERPKWLDRWMATKPWETRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPHHHQPQRHSIASPLHRTHQNGSLHHSPATPSPAKSRPIQVRSASPRCVRDDRSYHTSQTPSLRSNYHYTGSLCQNGGRAGTSSSGSGGGGTLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGGVKKRLSFPVPPDPYNVGMGYGNYGHSLRSPSFKSVSASHFGLEQQSNYSSCCTESLGGEISPSSTSDLRRWLR	513

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc121187g00002	513	MobiDBLite	consensus disorder prediction	288	352	-	-
	Stsc121187g00002	513	MobiDBLite	consensus disorder prediction	272	287	-	-
	Stsc121187g00002	513	Coils	Coil	37	57	-	-
	Stsc121187g00002	513	SMART	iq_5	116	137	IPR000048	GO:0005515
	Stsc121187g00002	513	SMART	iq_5	93	115	IPR000048	GO:0005515
	Stsc121187g00002	513	MobiDBLite	consensus disorder prediction	55	80	-	-
	Stsc121187g00002	513	Gene3D	-	91	148	-	-
	Stsc121187g00002	513	MobiDBLite	consensus disorder prediction	368	404	-	-
	Stsc121187g00002	513	ProSiteProfiles	IQ motif profile.	95	122	IPR000048	GO:0005515
	Stsc121187g00002	513	MobiDBLite	consensus disorder prediction	272	438	-	-
	Stsc121187g00002	513	MobiDBLite	consensus disorder prediction	491	513	-	-
	Stsc121187g00002	513	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	87	139	IPR027417	-
	Stsc121187g00002	513	Pfam	IQ calmodulin-binding motif	121	137	IPR000048	GO:0005515
	Stsc121187g00002	513	Pfam	IQ calmodulin-binding motif	97	115	IPR000048	GO:0005515
	Stsc121187g00002	513	ProSiteProfiles	IQ motif profile.	118	145	IPR000048	GO:0005515
	Stsc121187g00002	513	Pfam	Protein of unknown function (DUF4005)	358	462	IPR025064	-
	Stsc121187g00002	513	PANTHER	IQ-DOMAIN 5-RELATED	28	448	-	-
	Stsc121187g00002	513	MobiDBLite	consensus disorder prediction	54	91	-	-
	Stsc121187g00002	513	FunFam	IQ-domain 11	93	144	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc121187g00002	Stsc-Chr121187	16936	20259	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc121187g00002	90	513	IQD Protein Family	AT1G01110	63.265	8.94e-171	491

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc121187g00002	-		-	adu:107472901	848.966