Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121183g00005 ATGGGTGATAACAATGGAGGTAGCGGTTCTTCTAATGAAATCAATGGCGGCATCATCAAGGAGCAAGACCGGTTGCTGCCAATAGCAAATGTTGGTAGGATCATGAAGCAGATTCTTCCACAGAACGCGAAAATCTCGAAGGAGGCGAAGGAGACAATGCAGGAATGCGTGTCAGAGTTCATCAGTTTCGTGACGAGCGAGGCGTCTGAGAAGTGCCGGAAGGAGAGGAGGAAGACTGTTAATGGTGATGACATTTGCTGGGCGCTCGCAACGCTCGGTTTTGATGACTATGCCGAAGGGATGAGAAGGTATTTACATAGATACAGAGAGTTAGAGGTTGATAATAATAATAATAAAGAGAGGAAATAA 369 0.4553 MGDNNGGSGSSNEINGGIIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEGMRRYLHRYRELEVDNNNNKERK 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121183g00005 122 FunFam Nuclear transcription factor Y subunit B-6 14 122 - -
Stsc121183g00005 122 Gene3D Histone, subunit A 18 122 IPR009072 GO:0046982
Stsc121183g00005 122 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Stsc121183g00005 122 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Stsc121183g00005 122 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Stsc121183g00005 122 ProSitePatterns NF-YB/HAP3 subunit signature. 56 72 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc121183g00005 122 SUPERFAMILY Histone-fold 22 119 IPR009072 GO:0046982
Stsc121183g00005 122 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 116 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc121183g00005 122 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 25 89 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121183g00005 Stsc-Chr121183 37095 37463 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121183g00005 18 118 CCAAT-HAP3 Transcription Factor Family AT2G47810 78.218 4.55e-58 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc121183g00005 CBFD_NFYB_HMF 4.7e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121183g00005 K08065 - gmx:100794513 199.904