Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Stsc121182g00001 | CAAAATTTTACCATCTTGAAGGAATCAGATATCCAGCAAAGACAGGAGGAGGACATCACTAGGGTAGCTACAGTTCTTTCCATATCAAGAGTTGATGCCAGCATACTACTTCGTCATTACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCTGATGAAGATCGAGTCCGCAAAGCAGTTGGCTTGTTGGATAAGCCAACCGTCGTGCATGGCGATGCTAGAGAGCTAACTTGCGGCATCTGTTTCGAAAATCATCCACGTGCTAAGATAGAGATGGCTTCTTGTGGTCATCCTTTCTGTCTCTTGTGCTGGGAAGGATATATCAGCACATCCATTAATGATGGCCCTGGATGTTTGATGCTGCGATGTCCTGATCCCAGTTGTGGTGCTGCTGTTGGGCAAGATATGATTAACCGAGTAGCATCTGATGAAGATAAACAGAAGTATTTCCGCTACCTTCTTAGGTCTTATATTGAAGACAATAAGAAGTCCAAGTGGTGTCCTGCTCCAGGTTGTGAATATGCTGTTACTTTTGATGCGGGTAGTGGAAATTATGATGTCTCTTGCCTCTGTTCATATTGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGCACGGTTTCAAAGTGGATTTTGAAGAATAGTGCAGAATCTGAAAACATGAACTGGATACTTGCCAACTCAAAGCCATGCCCCAAATGCAAACGACCAATTGAAAAAAATCAAGGGTGCATGCACATGACATGCACACCACCATGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCAGACCATGGTGAAAGAACCGGTGGTTTTTATGCTTGCAATCGATATGAAGCAGCTAAACAGGAAGGAGTGTATGATGATGCTGAAAGAAGAAGAGAGATGGCCAAGAATTCGTTGGAGAGGTACACTCATTATTATGAGCGATGGGCCAGCAATCAATCTTCAAGGCAAAAAGCTCTTGCAGATCTACACCAGATGCAAACTATTCATCTTGAGAAGCTCAGTGACATTCAATGTCAGCCCGAATCACAGCTAAAGTTCATAACAGAGGCCTGGCTACAGATAGTTGAGTGTAGGCGAGTGCTGAAATGGACATATGCATATGGGTTCTATTTACCAGAGCATGAGCATGCCAAAAAGCAGTTTTTTGAGTACTTACAAGGTGAAGCAGAGTCTGGTCTAGAGAGACTTCATCAATGTGCCGAAAAAGAACTACAACCATTCCTCAATGCTGATGGCCCATCTAGAGAATTCAATGACTTTCGTACAAAACTAGCAGGATTAACTAGTGTGACTAGAAACTACTTTGAGAATTTAGTTAGGGCTTTGGAAAATGGTCTAGCTGATGTGGATAGTAACGGGGCAGCCTCCAGCAAAGCAACAAGCTCAAAAGGCGCTTCACCGAGCAGCAAGGGGAGAGGTGGAAGAGGAAAGGTAAGCTTCCGAAGTAGCATGTCCAGCAGAATGACAGATGATAATAGTCATTGGAGCTGCGACCAGTGTACCTACGCAAATGTCAGATCTGCCACAGTATGCCAGATGTGCAATCAACCACGCCGATAA | 1599 | 0.4403 | QNFTILKESDIQQRQEEDITRVATVLSISRVDASILLRHYNWSVSKVHDAWFADEDRVRKAVGLLDKPTVVHGDARELTCGICFENHPRAKIEMASCGHPFCLLCWEGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINRVASDEDKQKYFRYLLRSYIEDNKKSKWCPAPGCEYAVTFDAGSGNYDVSCLCSYCFCWNCTEEAHRPVDCGTVSKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDAERRREMAKNSLERYTHYYERWASNQSSRQKALADLHQMQTIHLEKLSDIQCQPESQLKFITEAWLQIVECRRVLKWTYAYGFYLPEHEHAKKQFFEYLQGEAESGLERLHQCAEKELQPFLNADGPSREFNDFRTKLAGLTSVTRNYFENLVRALENGLADVDSNGAASSKATSSKGASPSSKGRGGRGKVSFRSSMSSRMTDDNSHWSCDQCTYANVRSATVCQMCNQPRR | 532 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Stsc121182g00001 | 532 | CDD | RING-HC_ARI6-like | 77 | 138 | - | - | |
| Stsc121182g00001 | 532 | ProSiteProfiles | TRIAD supradomain profile. | 76 | 289 | IPR044066 | - | |
| Stsc121182g00001 | 532 | CDD | BRcat_RBR_ANKIB1 | 156 | 220 | - | - | |
| Stsc121182g00001 | 532 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 73 | 160 | IPR013083 | - | |
| Stsc121182g00001 | 532 | ProSitePatterns | Zinc finger RanBP2-type signature. | 508 | 527 | IPR001876 | - | |
| Stsc121182g00001 | 532 | SUPERFAMILY | RING/U-box | 76 | 161 | - | - | |
| Stsc121182g00001 | 532 | SUPERFAMILY | Ran binding protein zinc finger-like | 503 | 531 | IPR036443 | - | |
| Stsc121182g00001 | 532 | SUPERFAMILY | RING/U-box | 150 | 218 | - | - | |
| Stsc121182g00001 | 532 | Gene3D | - | 207 | 462 | - | - | |
| Stsc121182g00001 | 532 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 23 | 377 | IPR031127 | GO:0004842|GO:0016567 | |
| Stsc121182g00001 | 532 | SMART | zf_4 | 506 | 530 | IPR001876 | - | |
| Stsc121182g00001 | 532 | Gene3D | - | 502 | 532 | - | - | |
| Stsc121182g00001 | 532 | CDD | Rcat_RBR_ARI7-like | 234 | 288 | - | - | |
| Stsc121182g00001 | 532 | MobiDBLite | consensus disorder prediction | 492 | 506 | - | - | |
| Stsc121182g00001 | 532 | SUPERFAMILY | RING/U-box | 230 | 278 | - | - | |
| Stsc121182g00001 | 532 | Pfam | IBR domain, a half RING-finger domain | 228 | 276 | IPR002867 | GO:0008270 | |
| Stsc121182g00001 | 532 | Pfam | IBR domain, a half RING-finger domain | 149 | 211 | IPR002867 | GO:0008270 | |
| Stsc121182g00001 | 532 | MobiDBLite | consensus disorder prediction | 465 | 481 | - | - | |
| Stsc121182g00001 | 532 | SMART | ibrneu5 | 149 | 211 | IPR002867 | GO:0008270 | |
| Stsc121182g00001 | 532 | SMART | ibrneu5 | 224 | 285 | IPR002867 | GO:0008270 | |
| Stsc121182g00001 | 532 | MobiDBLite | consensus disorder prediction | 465 | 506 | - | - | |
| Stsc121182g00001 | 532 | Pfam | Ariadne domain | 298 | 478 | IPR045840 | - | |
| Stsc121182g00001 | 532 | FunFam | RBR-type E3 ubiquitin transferase | 74 | 163 | - | - | |
| Stsc121182g00001 | 532 | FunFam | RBR-type E3 ubiquitin transferase | 212 | 462 | - | - | |
| Stsc121182g00001 | 532 | ProSiteProfiles | Zinc finger RING-type profile. | 80 | 124 | IPR001841 | - | |
| Stsc121182g00001 | 532 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 504 | 532 | IPR001876 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Stsc121182g00001 | Stsc-Chr121182 | 4980 | 9233 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Stsc121182g00001 | 1 | 531 | ARIADNE family | AT1G65430 | 73.258 | 0.0 | 822 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Stsc121182g00001 | K11968 | - | gmx:100784195 | 980.319 |