Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121181g00005 ATGGGTCTCTGCGTTTCAAAGGCTCCTCCCGAGTCTCTTTCACCTTCTCACAACAACAATTCCAAACAAGAATCAGAAGCAGTAGCATCATCCAACGGTTATAACTCGACCTCCGTCAATGGTGGAGCGCGTAGTGATGCTGGGAAGAAGTCCCCATTCTTCCCGTTCTACAGCCCTAGCCCAGCTCACTATCTCTTCTCCAAGAAGTCTCCGGCGAGGGCGGGGTCGGAGTCGACGCCGCGGCGATTCTTCAAGCGGCCTTTCCCACCGCCGTCGCCAGCGAAGCACATAAAGGCGGTGCTGGCGCGGCGGCAGGGGTCAGTGAAGCCGAACGAATCGAGCATAGCGGAGGGTGGCGAGGAAGGCGTGGCGGTTGCGCTGGACAAGAGCTTCGGGTTCTCAAAGAATTTCAAGAACAAGTATGAAGTTGGGAGTGAAGTTGGGAGAGGGCATTTTGGGTATACTTGTTCTGCCAAATTCAAGAAGGGTGAACTCAAGGGTCACCAGGTTGCTGTCAAGGTTATCCCAAAAGCTAAGATGACCACTGCAATTGCTATTGAGGATGTGAGAAGGGAAGTGAAAATATTGAGAGCTTTGACAGGGCATAAGAATCTAGTAAAGTTCTATGATGCATATGAAGATCAAGATAATGTCTATATAGTAATGGAATTGTGTGAAGGAGGTGAGCTGTTGGATAGAATACTATCAAGAGGTGGGAAATACACCGAAGAAGATGCGAAAGCTGTCCTGGTGCAAATACTGAATGTTGTTGCATTTTGCCATCTGCAGGGTGTTGTGCACCGTGATCTTAAACCTGAGAACTTCTTGTTTGCTTCGAAAGATGAGAACTCAGAGTTGAAGGCCATAGACTTTGGGTTGTCGGATTTCGTTAAACCAGATGAAAGGCTTAATGATATTGTTGGTAGTGCATACTATGTGGCTCCTGAAGTTCTACATAGAGCTTACAGTACTGAGGCCGACATCTGGAGTATTGGTGTAATTGCCTATATTTTATTATGTGGCAGCCGTCCGTTTTGGGCACGGACTGAATCAGGGATATTTCGTGCTGTATTGAAAGCCGATCCAAGTTTTGAAGAACCTCCTTGGCCTTCTCTGTCGGATGACGCAAAGGATTTTGTAAAGCGACTACTAAATAAAGATCCACGGAAAAGAATGACTGCTGCACAAGCATTAGGTCATCCATGGATTAAAAATTACAAGGATGTGAAAGCACCCCTCGATATTCTAATTTTCAAACTCATGAAGTCATACATGCGCTCCTCATCTTTACGAAAAGCTGCTTTAAGGGCTTTGTCGAAGACATTAGCTGTTGACGAGCTGTGTTATTTGAAAGAGCAGTTTGCACTTTTAGAACCAAACAAAAACGGCACCATTAGCTTAGAAAATATCAAAGCGGCCTTGATGAAGAATGCAACCGATGCTATGAAGGAGTCGCGCATTCCTGAATTTTTGGGATCCCTTAATGCATTGCAATTTAGAAGGATGGATTTTGATGAGTTCTGTGCGGCGACTCTTAGTGTTCATCAACTTGAAGCCCTCGACCGGTGGGAGCAACATGCTCGCTGCGCCTATGAGCTTTTCGAAAAGGACGGGAACAGGGCTATAGTCATTGAGGAGCTAGCTTCGGAGCTAGGTCTTGGTCCATCTGTCCCTGTTCATGCAGTTCTCCATGACTGGATTAGGCACACTGATGGAAAGCTAAGCTTCCTTGGGTTTGTCAAATTGCTGCATGGTCCGTCTCGTAGTCTCATGAAACCTCAATAG 1785 0.4644 MGLCVSKAPPESLSPSHNNNSKQESEAVASSNGYNSTSVNGGARSDAGKKSPFFPFYSPSPAHYLFSKKSPARAGSESTPRRFFKRPFPPPSPAKHIKAVLARRQGSVKPNESSIAEGGEEGVAVALDKSFGFSKNFKNKYEVGSEVGRGHFGYTCSAKFKKGELKGHQVAVKVIPKAKMTTAIAIEDVRREVKILRALTGHKNLVKFYDAYEDQDNVYIVMELCEGGELLDRILSRGGKYTEEDAKAVLVQILNVVAFCHLQGVVHRDLKPENFLFASKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRAYSTEADIWSIGVIAYILLCGSRPFWARTESGIFRAVLKADPSFEEPPWPSLSDDAKDFVKRLLNKDPRKRMTAAQALGHPWIKNYKDVKAPLDILIFKLMKSYMRSSSLRKAALRALSKTLAVDELCYLKEQFALLEPNKNGTISLENIKAALMKNATDAMKESRIPEFLGSLNALQFRRMDFDEFCAATLSVHQLEALDRWEQHARCAYELFEKDGNRAIVIEELASELGLGPSVPVHAVLHDWIRHTDGKLSFLGFVKLLHGPSRSLMKPQ 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121181g00005 594 Gene3D Transferase(Phosphotransferase) domain 1 230 417 - -
Stsc121181g00005 594 ProSiteProfiles Protein kinase domain profile. 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121181g00005 594 ProSitePatterns Protein kinases ATP-binding region signature. 147 173 IPR017441 GO:0005524
Stsc121181g00005 594 Gene3D - 421 512 - -
Stsc121181g00005 594 Pfam Protein kinase domain 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121181g00005 594 SUPERFAMILY Protein kinase-like (PK-like) 138 429 IPR011009 -
Stsc121181g00005 594 FunFam CDPK-related kinase 3 133 305 - -
Stsc121181g00005 594 CDD STKc_CAMK 140 402 - -
Stsc121181g00005 594 FunFam Calcium-dependent protein kinase SK5 313 408 - -
Stsc121181g00005 594 FunFam CDPK-related kinase 1 134 229 - -
Stsc121181g00005 594 SMART serkin_6 141 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121181g00005 594 MobiDBLite consensus disorder prediction 70 89 - -
Stsc121181g00005 594 Gene3D Phosphorylase Kinase; domain 1 134 229 - -
Stsc121181g00005 594 MobiDBLite consensus disorder prediction 11 44 - -
Stsc121181g00005 594 FunFam CDPK-related kinase 1 440 512 - -
Stsc121181g00005 594 MobiDBLite consensus disorder prediction 1 52 - -
Stsc121181g00005 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 265 277 IPR008271 GO:0004672|GO:0006468
Stsc121181g00005 594 PANTHER SERINE/THREONINE-PROTEIN KINASE 127 569 - -
Stsc121181g00005 594 Gene3D - 428 582 - -
Stsc121181g00005 594 SUPERFAMILY EF-hand 431 585 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121181g00005 Stsc-Chr121181 42513 49309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121181g00005 1 592 EF-hand Containing Proteins AT3G50530 75.079 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Stsc121181g00005 Pkinase 4.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121181g00005 K13412 - vvi:100264733 964.911