Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121173g00006 ATGGATCAGGCAAGAAGTGAAGACAGTGCTGAGGTGTTGGATAATGTGGGTGAAGGGGTGGATAAGAATTTGAGCAATTTGGTTGAAGGAGTTGCAACTGATGCAGGAGATGGTAGTGGATTGGTTGAGAGAGATAATGTGGTTGGAGAAAATGGAACTTCAGAAGAGATTTCCACTGATCTGGCTTTGAATAAGGAGGAGGAGGAGCCTCGAGAGGTTAAGGATCAGGAATCGCCTGACTCGCATAAAACCAGTGATACTTTGTGCAGGGTTGAGCAAGGAACTAGTTATAGTTCAAGAAATTTGGTCAGTGGGGAGGTTGTACTTGAGACCTGTGTTGTAATAGATCCTCCTGCTCAGGTCGAGCATGTCCATGGGAAATCGAAAGCAAAAGCCAACGAATCCGGGTTGAGCAAGCTGACCATGAAAGCACCAAAGGCAGTGTCTGAGACAGATAAAAGTTCATGTGCAATTGATATAAACAAGGAGTTTAGTGAGAACTTGGAAGGTGAAATGATTTGTAGGATTTGTCATCTGGCTTCAGGGCAACCAATAGAAGCAACGGTGGTTGGGACTGCTAACAATGAAACAAGTACAGATTTGATTCAACTTGGGTGCGCATGTAAGGATGAGCTTGGCATTGCACACAGTCATTGTGCTGAGGCATGGTTCAAGCTTAAAGGAAGCAGGTTGTGTGAAATATGTGGTGAGACTGCAAAAAATGTTTCACAATCACAGGTTGTCAATAATTCATTTATGGAAGAGTGGGACGAAAGTAGGTTCATGGATGGCGGTAATAGTACCTCAACCAGCTTCTTTGGAAGATGCTGGCGTGGACAGCCATTCTGTAACTTCTTGATGGCATGCTTGGTAATAGCTTTCGTTCTGCCATGGTTCTTCCGTGTAAATATGTTCTAG 918 0.4401 MDQARSEDSAEVLDNVGEGVDKNLSNLVEGVATDAGDGSGLVERDNVVGENGTSEEISTDLALNKEEEEPREVKDQESPDSHKTSDTLCRVEQGTSYSSRNLVSGEVVLETCVVIDPPAQVEHVHGKSKAKANESGLSKLTMKAPKAVSETDKSSCAIDINKEFSENLEGEMICRICHLASGQPIEATVVGTANNETSTDLIQLGCACKDELGIAHSHCAEAWFKLKGSRLCEICGETAKNVSQSQVVNNSFMEEWDESRFMDGGNSTSTSFFGRCWRGQPFCNFLMACLVIAFVLPWFFRVNMF 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121173g00006 305 PANTHER ZINC FINGER, RING-CH-TYPE 68 305 - -
Stsc121173g00006 305 SMART ringv_2 173 236 IPR011016 GO:0008270
Stsc121173g00006 305 MobiDBLite consensus disorder prediction 60 87 - -
Stsc121173g00006 305 MobiDBLite consensus disorder prediction 1 91 - -
Stsc121173g00006 305 SUPERFAMILY RING/U-box 171 238 - -
Stsc121173g00006 305 Pfam RING-variant domain 193 235 IPR011016 GO:0008270
Stsc121173g00006 305 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 248 IPR013083 -
Stsc121173g00006 305 ProSiteProfiles Zinc finger RING-CH-type profile. 166 242 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121173g00006 Stsc-Chr121173 30828 33478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121173g00006 151 304 C3H Transcription Factor Family AT5G05830 38.095 2.34e-26 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc121173g00006 - - gmx:100791129 399.823