Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc121173g00005 ATGGCTCACCACCATAAGGAAATGCCTCCTCCTGTTGTTAATGGGAATGATTCCCTCACTGGTCATATCATATCTACTACAATTGGTGGAAAAAATGGGGAGCCCAAACAGACTATAAGTTACATGGCAGAGCACGTCGTGGGTAATGGTTCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAAATGGGGAGGCGGTAGCCATCAAGAAGGTTTTACAGGACAGAAGATATAAGTGTCGTGAACTAGAGTTAATGCGCTTGATGGATCATCCAAATATTTTCAGGGGGCTGGCTTATATCCACACTGTCCCTGGAGTATGTCACAGAGATTTGAAGCCACAAAACATACTGGTTGACCCTAATACACACCAGGTTAAGATATGTGATTTTGGAAGTGCAAAAGTGCTGGTCAAAGGAGAAGCTAATATATCATATATATGTTCACGGTTCTATCGCGCACCAGAACTTATATTTGGCGCTACGGAGTATACTACTTCAATTGATATTTGGTCAGCTGGTTGTGTCCTAGCTGAACTGCTTTTGGGCCAGCCATTGTTTCCGGGTGAAAATGCAGTGGACCAGCTTGCAGAGATTATCAAGGTTCTTGGCACTCCCACTCGAGAGGAAGTCCGTTGCATGAATCCAAACTACAACAACTTCAGGTTTCCACAGATAAAAGCACACCCATGGCACAAGATATTCCACAAAAAGATGCCTCCCGAAGCAATTGATCTCGCTTCCCGGCTATTGCAGTATTCCCCTAGTCTCCGATGTACTGCACTAGAAGCTTGTGCACACCCATTCTTTGATGAACTCCGGGAACCCAATGCTTGCTTGCCAAATGGTCGTCCATTTCCACCACTATTCAACTTTAAACAAGAGTTATCTGGAGCACCTCCAGAGCTTTTTAACAAGTTGATCCCTGGCTACATGAAGCGGCAACTAGGGCTGCAACTTCCCCATTCTGCAGGAACATGA 981 0.4475 MAHHHKEMPPPVVNGNDSLTGHIISTTIGGKNGEPKQTISYMAEHVVGNGSFGIVFQAKCLENGEAVAIKKVLQDRRYKCRELELMRLMDHPNIFRGLAYIHTVPGVCHRDLKPQNILVDPNTHQVKICDFGSAKVLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLAEIIKVLGTPTREEVRCMNPNYNNFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNACLPNGRPFPPLFNFKQELSGAPPELFNKLIPGYMKRQLGLQLPHSAGT 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc121173g00005 326 ProSitePatterns Serine/Threonine protein kinases active-site signature. 107 119 IPR008271 GO:0004672|GO:0006468
Stsc121173g00005 326 FunFam Shaggy-related protein kinase kappa 69 313 - -
Stsc121173g00005 326 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 94 314 - -
Stsc121173g00005 326 SMART serkin_6 41 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121173g00005 326 Gene3D Transferase(Phosphotransferase) domain 1 79 281 - -
Stsc121173g00005 326 Pfam Protein kinase domain 94 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121173g00005 326 ProSiteProfiles Protein kinase domain profile. 1 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc121173g00005 326 SUPERFAMILY Protein kinase-like (PK-like) 40 294 IPR011009 -
Stsc121173g00005 326 CDD STKc_GSK3 36 273 IPR039192 -
Stsc121173g00005 326 Gene3D Phosphorylase Kinase; domain 1 35 78 - -
Stsc121173g00005 326 ProSitePatterns Protein kinases ATP-binding region signature. 47 71 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc121173g00005 Stsc-Chr121173 24977 28968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc121173g00005 47 308 MAP Kinase Gene Family AT2G43790 33.538 7.36e-47 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Stsc121173g00005 Pkinase 3.4e-44 CL0016